Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04249 ATGAGAGAAAAAACTGAACCATTGCTGGTTCTTCTACCAATTTTAGTTCTACTATTTTCAGTAACCAATTCATCAGAATTACCAACACAAAACCATCTTCAAGTAGCACAATCAACATGTGAAGGAACACTTTATCCAAACCTTTGTGTCTCAACCTTATCCACATTCCCAGATCTTACCTCAAAAACAGTCCCACAAGTTATTTGCTCTGTCCTTAACTTCACCATAAAGGAAGTTAAATTATCATCCTACAACTGCACCGATCTACGATATCGTAGCAGAAGTGTACAAAGCATACTTGACAAAAGAGCTCTCGACGATTGTGTCAATTTATTTGACACAACCGTCGAAGAACTCAAAACATCAATTTCTGAACTCTCTCAAAATGAAACCACAATAGCTTATGGCGATAAACGTAACTGTCAAACTCTGCTAAGCGGCGCAATGACGAATGTATACACATGTTTGGATGGTTTTGCTTATAGTAAAAGCAagttaagaaacaaaattgagaACAGTTTGAATGATATTTCAAATCATGTTAGTAATTCACTTTCCTTGTTGAAGAAAGTTCCTGGAGTTAAGtctaaaacttcaaattctgAGGCTTTTCCTGAATATGGTAAGGTGAAAGACGGGTTTCCGACATGGGTTTCCCCGAAAGATAGGAAGCTATTACAAACTACAACGAATCAAACTAAGTTCAATCTTGTTGTTGCGAAAGATGGCTCGGGCCATTTTGCTACTATAGGAGAAGCAATTGCAGCAGCTCCAAACTCGAGCGCAACTAGATTTTTGATACATATAAAAGCGGGGACGTACTTAGAGAATGTGGATGTGCCAAGGAAGAAGATAAATTTGATGTTAGTTGGAGATGGAATTGGAAAGACAGTTGTGAAGGCTAGTAGAAATGTTGTAGATGGATGGACCACTTTCCAATCAGCTACATTTTCTGTTGTGGGAGACAATTTCATAGCCAAGGGAATAACCTTTGAGAACTCAGCTGGAGCAAGCAAACATCAAGCTGTGGCCGTGAGAAGCGGCGCCGATTTCTCAGCCTTCTACCAATGCAGCTTTGTTGCTTACCAAGACACACTATATGTCCATTCTCTCCGTCAATTTTACCGCGAATGTGACGTTTATGGCACCGTAGACTTCATCTTTGGCAACGCAGCAGTGGTTTTCCAAAATTGTAACCTATATGCGCGCAAACCCGATCCAAATCAAAAGAATTTGTTCACTGCACAAGGAAGAGAAGATCCTAACCAAAACACTGGAATTTCGATTATAAACTCTAAAGTTACGGCTGCTTCGGATTTGATTCCAGTAAAATCAACGTTCAAGACTTACCTCGGTCGTCCATGGAAACAATATTCAAGAACAGTTTATCTTAATTCCTTTTTGGACGATTTGATAGATCCGGCTGGATGGTTAGAATGGAACGGAACATTTGCGTTGGACACATTGTACTATGGCGAGTATAAGAATCGGGGTCCGGGTTCGAACACAACTGCTAGAGTTAAGTGGCCAGGTTATAGAGTCATTACAAACACTACTGAGGCAAGTCAGTTCACTGTTAGGCAGTTTATTCAAGGCAATGTTTGGTTGAACTCTACTGGAATTCCATTTTTCCCTGATTTGAGTTGA 1647 0.3922 MREKTEPLLVLLPILVLLFSVTNSSELPTQNHLQVAQSTCEGTLYPNLCVSTLSTFPDLTSKTVPQVICSVLNFTIKEVKLSSYNCTDLRYRSRSVQSILDKRALDDCVNLFDTTVEELKTSISELSQNETTIAYGDKRNCQTLLSGAMTNVYTCLDGFAYSKSKLRNKIENSLNDISNHVSNSLSLLKKVPGVKSKTSNSEAFPEYGKVKDGFPTWVSPKDRKLLQTTTNQTKFNLVVAKDGSGHFATIGEAIAAAPNSSATRFLIHIKAGTYLENVDVPRKKINLMLVGDGIGKTVVKASRNVVDGWTTFQSATFSVVGDNFIAKGITFENSAGASKHQAVAVRSGADFSAFYQCSFVAYQDTLYVHSLRQFYRECDVYGTVDFIFGNAAVVFQNCNLYARKPDPNQKNLFTAQGREDPNQNTGISIINSKVTAASDLIPVKSTFKTYLGRPWKQYSRTVYLNSFLDDLIDPAGWLEWNGTFALDTLYYGEYKNRGPGSNTTARVKWPGYRVITNTTEASQFTVRQFIQGNVWLNSTGIPFFPDLS 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04249 548 TIGRFAM PME_inhib: pectinesterase inhibitor domain 8 190 IPR006501 GO:0004857
Tsu07g04249 548 Pfam Plant invertase/pectin methylesterase inhibitor 37 187 IPR006501 GO:0004857
Tsu07g04249 548 ProSitePatterns Pectinesterase signature 2. 380 389 IPR033131 -
Tsu07g04249 548 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 193 IPR035513 -
Tsu07g04249 548 PANTHER PECTINESTERASE 28 544 - -
Tsu07g04249 548 PANTHER PECTINESTERASE 28 544 - -
Tsu07g04249 548 SMART PMEI_2 31 187 IPR006501 GO:0004857
Tsu07g04249 548 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 37 191 IPR035513 -
Tsu07g04249 548 SUPERFAMILY Pectin lyase-like 233 545 IPR011050 -
Tsu07g04249 548 CDD PMEI-like_3 38 193 - -
Tsu07g04249 548 Pfam Pectinesterase 236 533 IPR000070 GO:0030599|GO:0042545
Tsu07g04249 548 Gene3D - 230 547 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04249 Tsu-Chr7 47992811 47997357 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04249 60 547 Carbohydrate Esterase AT4G02320 55.578 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04249 K01051 - gmx:100813592 800.816