Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04248 ATGGGTTGGAAGATCTTCTCTATTGCTACAttgtcatttttctttctcatttcctTCTTTGCATTTCTAGCTACTGCAAATGACATCCTTGTCCCTCAAGAAACCATTTGTGAATCCTCCCACTACCCATCTTATTGTAGAAATATTCTTCCAAAACAAAAAGCCAAAGTCCATGACTTTGCTAGATTCTCAATTCAAAAATCCATGTTTCAATCCCATAAATTTTTGAACTCATTGAACTTTTATCTTGGGTCTAGTACATTATCTAAAGAgacaaaaaatgttataaaagaTTGTTTATTCCTCTCTCAGCTCACTTCACAATACTTGTCAAAATCCAATTACATTGCACTCAAAAACACTAATGAAACTCTCTACACCTCCCAAGTTGATGATACTCAAACCCTTCTTAGTGCAGTTATAACAAATCACCAAACATGTTTAGATGGACTAATGACCGTGGCTAATTCCAATTTAACCATAAAAAATGATCTTATTAGCCAACTCTCTAATGATAACAAAATTCATAGTGTTTCACTTGCTCTATTCACAAAGGGTTGGATGCATGAAAAAAAGAACAAGACATTATGGGATTCTAGAGGGTGGcattttggtcattttagaaATGGTAGATTACCTTTGAAGATGTCAAATAGAACAAGAGCCATTTATGATTCATCAAGAGGCAGAGGAAAaaatcatgatgatgatgaagatgaagggGGTGTTTTGGTTAGGGACATTGTTGTTGTTAGTAAAGATGGGAGTGGAAACTTTACAACTATCAATGATGCTGTTACTGCTGCTCCAAATAACACTATTAATGCAACAAATGGatatttcttgatttttatCAAAGAGGGTGTTTATGAAGAATATGTGTCTATCCCTCAAAACAAGGCATATTTGATGTTGATCGGAGACGGAATCGATCAAACAGTTATCACCGGCAACCACAGCGTTGGTGACGGATGGACAACTTTTAATTCCCCAACATTTGCTGTGGTAGCACCGGGGTTTGTAGCCATTAATATAACATTTCGGAACACCGCTGGACCGAGCAAATTCCAAGCAGTTGCAATGAGAAGTGGAGCAGACATGTCGACTTTCTATCGTTGCAGCTTTGAAGGGTACCAAGATACACTCTATACACATTCACTAAGacaattttataaagaatgtGATATTTATGGAACAGTTGATTTCATATTTGGAAACGCGGCAGTTGTTTTGCAAAACTGCAACATATATCCTCGTCTTCCTTTACCAGGACAGTTCAACCCGATTACCGCTCAAGGACGAACGGATCCAAATCAAAACACGGGTATTTCCATTCATAATTGCACTATTAAACCAGCTGAAGATTTAGTTCCAAGTGTTGGTATTGTGAAAACTTATCTAGGGAGACCATGGAAAGAGTATTCAAGAACAGTTGTTATGCAATCTTTGTTGGATAATTTGATAGAACCAAGTGGTTGGTCTATATGGAGTGGTGATTTTGCACTCTCTACTTTGTATTATGCAGAGTATGATAATAGAGGAGCTGGTGCAAATACTGTTAATAGAGTTACATGGCAAGGGTACCATGTGATTAATGCTACTGATGCTGCTAATTTTACTGTTGATAATTTTCTGCATGGGAATGATTGGTTGCCTCAAATTGGAGTTCCTTATATTAAttga 1683 0.3476 MGWKIFSIATLSFFFLISFFAFLATANDILVPQETICESSHYPSYCRNILPKQKAKVHDFARFSIQKSMFQSHKFLNSLNFYLGSSTLSKETKNVIKDCLFLSQLTSQYLSKSNYIALKNTNETLYTSQVDDTQTLLSAVITNHQTCLDGLMTVANSNLTIKNDLISQLSNDNKIHSVSLALFTKGWMHEKKNKTLWDSRGWHFGHFRNGRLPLKMSNRTRAIYDSSRGRGKNHDDDEDEGGVLVRDIVVVSKDGSGNFTTINDAVTAAPNNTINATNGYFLIFIKEGVYEEYVSIPQNKAYLMLIGDGIDQTVITGNHSVGDGWTTFNSPTFAVVAPGFVAINITFRNTAGPSKFQAVAMRSGADMSTFYRCSFEGYQDTLYTHSLRQFYKECDIYGTVDFIFGNAAVVLQNCNIYPRLPLPGQFNPITAQGRTDPNQNTGISIHNCTIKPAEDLVPSVGIVKTYLGRPWKEYSRTVVMQSLLDNLIEPSGWSIWSGDFALSTLYYAEYDNRGAGANTVNRVTWQGYHVINATDAANFTVDNFLHGNDWLPQIGVPYIN 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04248 560 Coils Coil 559 560 - -
Tsu07g04248 560 SMART PMEI_2 26 182 IPR006501 GO:0004857
Tsu07g04248 560 PANTHER PECTINESTERASE 15 559 - -
Tsu07g04248 560 SUPERFAMILY Pectin lyase-like 246 559 IPR011050 -
Tsu07g04248 560 Pfam Plant invertase/pectin methylesterase inhibitor 34 171 IPR006501 GO:0004857
Tsu07g04248 560 CDD PMEI-like_3 35 187 - -
Tsu07g04248 560 ProSitePatterns Pectinesterase signature 2. 396 405 IPR033131 -
Tsu07g04248 560 Gene3D - 244 560 IPR012334 -
Tsu07g04248 560 Pfam Pectinesterase 249 548 IPR000070 GO:0030599|GO:0042545
Tsu07g04248 560 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 185 IPR035513 -
Tsu07g04248 560 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 15 559 - -
Tsu07g04248 560 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 185 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04248 Tsu-Chr7 47986475 47988366 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04248 14 560 Carbohydrate Esterase AT4G02330 58.275 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04248 K01051 - gmx:100813051 750.355