Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04247 atggccttcaaaaaaatttcctttcttacactcttcttttctctctcactttcCATCTTAACATCATTACCATTATCATCTCTAGCAGATAATCCTAAGATCCCACCACAAAAAATATGCGACTCCACCGTAGACCCTACCTTTTGCAAAACACTACTTGCTAACCAAAACGGCACCGTAATTGACTATGGTAGATTTTCTATCCGAAAATCCTTATCTCAATCAAGAAATTTATTAAACTTAATAaattcaaatcttcaaaataaATCATCTTTGTCACAACCCACAATTTCAGCTCTTCAAGATTGTCAATTCCTAGCTcaacaaaattttgaatatttatcAAACACTCATCAAACTGCTAATAGTACTAGCAATGTTCTTTCCATTTCTCAAAGTGAAGAATTTCAGACAATTCTTAGTGCTGTTTTAACAAATCAACAAACTTGTTTAGATGGTTTAAGCATCACAAATTCTGATCAACCAGCGATTAATGATTTAACATCGACACTTTCGAATGATGCCAAGATTCATAGTTTGTCACTTGCTCTATTTTTAAAGGGTTGGGTTCGtgacaacaaaaaacaaacatcatGGCCGCAAAATGGAAGACATTTGAATTTTCGTAACGGTCAATTACCGTTGAAAATGTCAGATGGAGCACGTGCTATATATGATTCGGCTAGAAATCGACATGGGAGAAAATTACTTCAAACAGTTGATGAAAGTGTTACGGTAAATGAAATTGTGGTTGTTAATCAAGATGGAAGTGGAAATTTTACAACCATTAACGATGCTATAAACGTTGCACCAAATAACACGGTTGCTAGCAGTGGCTACTTTCTTATTTTTGTTACGGAGGGTGTGTATCAAGAGTATGTATCGATACCAAAAAATAAGAAGTATTTGATGATGGTTGGAGATGGAATTAATCGAACAATCATCACCGGTGATCACAATGTTGTTGATAATTTTACAACGTTCAACTCAGCAACATTTGCTGTGGTGTCACAAGGTTTCTTAGCAGTCAACATAACATTCCGCAACACGGCCGGACCAATCAAACACCAAGCAGTTGCAGTAAGAAACGGAGCTGATCTATCCACATTCTACAGCTGCAGTTTCGAAGGTTATCAAGACACATTATACACACATTCCATGAGACAATTTTATCGCGAATGTGACATATATGGCACAGTTGACTTCATATTTGGAAACGCTGCAGTTGTTTTCCAAAACTGCAACTTATATCCCCGTCTTCCGAGTAGTGGACAATTCAATGCTATAACCGCTCAAGGCCGAACTGATCCAAATCAAAACACGGGAACTTCCATACATAATGCAACTATAAAAGCCGCTGATGATTTAGCTCCGATGATCGGTACAGTTAAAACATATCTTGGTAGGCCATGGAAAGAGTACTCAAGGACAGTTTATTTGCAAAGTTTTATCGACAGTTTGATAGATCCTTCTGGTTGGCATGATTGGAGTGGAGATTTTGCATTAAGTACATTGTATTATGCAGAGTATAATAATACAGGACCGGGTTCGAATACTAGTTCACGAGTGAGTTGGACCGGTTATCATGTTATTGATGCTACTGATGCTGCTAATTTTACTGTGTCTAATTTTTTGGATGGGGATAGTTGGTTGCCTCAAACTGGTGTTCCATACTCCAGTGGATTGATATAA 1692 0.3522 MAFKKISFLTLFFSLSLSILTSLPLSSLADNPKIPPQKICDSTVDPTFCKTLLANQNGTVIDYGRFSIRKSLSQSRNLLNLINSNLQNKSSLSQPTISALQDCQFLAQQNFEYLSNTHQTANSTSNVLSISQSEEFQTILSAVLTNQQTCLDGLSITNSDQPAINDLTSTLSNDAKIHSLSLALFLKGWVRDNKKQTSWPQNGRHLNFRNGQLPLKMSDGARAIYDSARNRHGRKLLQTVDESVTVNEIVVVNQDGSGNFTTINDAINVAPNNTVASSGYFLIFVTEGVYQEYVSIPKNKKYLMMVGDGINRTIITGDHNVVDNFTTFNSATFAVVSQGFLAVNITFRNTAGPIKHQAVAVRNGADLSTFYSCSFEGYQDTLYTHSMRQFYRECDIYGTVDFIFGNAAVVFQNCNLYPRLPSSGQFNAITAQGRTDPNQNTGTSIHNATIKAADDLAPMIGTVKTYLGRPWKEYSRTVYLQSFIDSLIDPSGWHDWSGDFALSTLYYAEYNNTGPGSNTSSRVSWTGYHVIDATDAANFTVSNFLDGDSWLPQTGVPYSSGLI 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04247 563 CDD PMEI-like_3 39 189 - -
Tsu07g04247 563 SUPERFAMILY Pectin lyase-like 246 561 IPR011050 -
Tsu07g04247 563 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 185 IPR035513 -
Tsu07g04247 563 SMART PMEI_2 31 184 IPR006501 GO:0004857
Tsu07g04247 563 Pfam Pectinesterase 250 548 IPR000070 GO:0030599|GO:0042545
Tsu07g04247 563 Pfam Plant invertase/pectin methylesterase inhibitor 37 181 IPR006501 GO:0004857
Tsu07g04247 563 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 187 IPR035513 -
Tsu07g04247 563 ProSitePatterns Pectinesterase signature 2. 396 405 IPR033131 -
Tsu07g04247 563 PANTHER PECTINESTERASE 19 562 - -
Tsu07g04247 563 Gene3D - 243 562 IPR012334 -
Tsu07g04247 563 PANTHER PECTINESTERASE 19 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04247 Tsu-Chr7 47977215 47979637 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04247 5 563 Carbohydrate Esterase AT4G02330 59.862 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04247 K01051 - gmx:100813051 840.491