Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04246 ATGGTTTCTTCCAAGTTATGTAACCTCCTCTCAATATTTCTTATTCTCTTATTTGCTTCTATAGCATTTTCCGACACCACCGTGACTAGTCCAAATCCAATTACGCCTACTTCTCCGGGCACGGCGTGCAAATCCACCCCTGACCCGACCTATTGCAAATCCATTCTCCCTCCTCAAAATGCCAATGTTTACGATAATGCTCGATTCTCGTTCAAAAAATCTCTATCACAATCCCGAAAATTCTCGAACCTAATCAACCAATATCTCCAACGTCGCTCAAAACTTTCCACCACCGCTATACGAGCACTACAAGATTGCCAATCGCTTAGTGACCTCAACTTTGATTTCCTTTCGAGTTCTTTTCTAACCGTTAACAAAACAGCTAAGTTTCTTCCAAGTTTACAAGCCGATAACATCCAAACATTACTTAGCGCAATTCTCACAAACCAACAAACATGTTTAGATGGTCTTAAAGACACTTCATCAGCTTGGAGTTTTAGAAATGGACTCACAATTCCACTTTCTAATGACACCAAACTCTATAGTGTTTCTCTTGCTTTCTTTACTAAAGGTTGGGTTCCTAATACCAAACCAAAAACCTCTTTTCATAATAATGTGCATCCCTCGTTTAAAAACGGGCGTTTGCCACTTAAGATGTCGAGCAAGACACGTGCGATTTACGAGTCAGTTAGTCGTAGAAAGCTTCTTCAAAGTAATCAAGTTGGTGAGGATGTTGTGGTGAAAGATATTGTGACGGTTAGTCAAGATGGAAGTGGAAACTTTACGACGATTAATGATGCTATTGCTGCAGCTCCAAATAAATCTGTTTCTACTGATGGTTATTTCTTGATCTATGTTACTGCTGGTGTTTATGAAGAGTATGTTAATATTGAtaagaaaaaaacttatttgatGATGATTGGAGATGGTATCAACAAGACTATCATCACTGGAAATCATAGTGTCGTCGATGGATGGACCACATTCGGCTCCCCAACTTTCGCTGTGGTTGGACAAGGATTCGTGGGTGTGAATATGACCATCCGTAACACCGCCGGTGCTGTGAAGCACCAAGCAGTGGCACTTCGTAACGGGGCAGATTTATCAACCTTTTACAGTTGCAGTTTCGAAGGGTACCAAGACACATTATACACACATTCACTAAGACAATTCTACCGAGAATGTGACATCTACGGAACAGTTGATTTCATATTCGGAAACGCTAAGGTTGTTTTCCAAAATTGTAACCTTTATCCTCGTCTTCCGATGAGTGGACAATTCAATGCAATCACAGCACAAGGAAGAACAGATCCAAATCAAGACACAGGTACTTCAATTCACAATTGTACAATTAAAGGTGCAGATGATTTAGTTTCTAGCAATGGTAATGTTGCAACATATTTGGGTAGACCATGGAAAGAATATTCAAGAACAGTTTATATGGAAACATTTATGGATAATGTGATTAATGTTGCTGGTTGGCGTGCTTGGGATGGTGAATTTGCACTAAGTACATTATATTATGCTGAGTTTAATAATACTGGACCAGGGTCTAATACTGATGGAAGAGTGACATGGCAAGGTTATCATATGATTAATGTCACTGATGCTGCTAATTTTACTGTGGCTAATTTCTTGCTTGGTGATGATTGGTTGCCTCAGACAGGGGTGTCTTATACTAATAacttgattaatatttaa 1701 0.3892 MVSSKLCNLLSIFLILLFASIAFSDTTVTSPNPITPTSPGTACKSTPDPTYCKSILPPQNANVYDNARFSFKKSLSQSRKFSNLINQYLQRRSKLSTTAIRALQDCQSLSDLNFDFLSSSFLTVNKTAKFLPSLQADNIQTLLSAILTNQQTCLDGLKDTSSAWSFRNGLTIPLSNDTKLYSVSLAFFTKGWVPNTKPKTSFHNNVHPSFKNGRLPLKMSSKTRAIYESVSRRKLLQSNQVGEDVVVKDIVTVSQDGSGNFTTINDAIAAAPNKSVSTDGYFLIYVTAGVYEEYVNIDKKKTYLMMIGDGINKTIITGNHSVVDGWTTFGSPTFAVVGQGFVGVNMTIRNTAGAVKHQAVALRNGADLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAKVVFQNCNLYPRLPMSGQFNAITAQGRTDPNQDTGTSIHNCTIKGADDLVSSNGNVATYLGRPWKEYSRTVYMETFMDNVINVAGWRAWDGEFALSTLYYAEFNNTGPGSNTDGRVTWQGYHMINVTDAANFTVANFLLGDDWLPQTGVSYTNNLINI 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04246 566 Pfam Plant invertase/pectin methylesterase inhibitor 41 186 IPR006501 GO:0004857
Tsu07g04246 566 Pfam Pectinesterase 251 549 IPR000070 GO:0030599|GO:0042545
Tsu07g04246 566 SUPERFAMILY Pectin lyase-like 247 560 IPR011050 -
Tsu07g04246 566 CDD PMEI-like_3 41 192 - -
Tsu07g04246 566 Gene3D - 245 563 IPR012334 -
Tsu07g04246 566 ProSitePatterns Pectinesterase signature 2. 397 406 IPR033131 -
Tsu07g04246 566 TIGRFAM PME_inhib: pectinesterase inhibitor domain 11 176 IPR006501 GO:0004857
Tsu07g04246 566 PANTHER PECTINESTERASE 24 562 - -
Tsu07g04246 566 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 190 IPR035513 -
Tsu07g04246 566 SMART PMEI_2 34 187 IPR006501 GO:0004857
Tsu07g04246 566 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 7-RELATED 24 562 - -
Tsu07g04246 566 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 190 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04246 Tsu-Chr7 47971082 47973122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04246 10 564 Carbohydrate Esterase AT4G02330 62.238 0.0 715
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04246 K01051 - gmx:100800971 920.613