Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04244 ATGGCTTCTGACCCAAACCTTCAAGCTAAGTATGCCCTTAACACCAAAGTCATGGTAGGCTCTTCTGTCCTTCTCTTCATACTCATAATCATCGTCGTTCTCTTTCGTACTTATGTCTACCTCTGCCACAATCGCCGCCGCCACCGTCAATTCTCTCAACAATCTCTTACAACCACCACTTTTAAAGAAGAACGTCTTGACCCTTCCGTTCTCAAATCTATTCCTACTTTTATCTTCTCCGCCACCGCCACCAGCCGTAGTATTCACGACTGCGCCGTTTGCTTGTCGGAGTTCACCGACGGTGATGTGTGCCGTACGCTTCCAAACTGTAAGCACGATTTTCATTCTCAGTGTATCGATATGTGGCTCGGTTCTCATTCCAATTGTCCTCTTTGCCGAACTCCGGTTCAACCGGCGACGGTTCACTCTCATACTGAACCGTGCGATGTTTCCCGTTTAGAAGAACCGGGTGAGGGTTGTTCGAATTCCCTTGAACCGGTTGGGTGTCCGAGAAAGCCGTTTAGTATAATTGTAGAGATTCCGCCAGAGGTAACCCGGGTTGGTTCACGTACCCGAAGATAA 582 0.4845 MASDPNLQAKYALNTKVMVGSSVLLFILIIIVVLFRTYVYLCHNRRRHRQFSQQSLTTTTFKEERLDPSVLKSIPTFIFSATATSRSIHDCAVCLSEFTDGDVCRTLPNCKHDFHSQCIDMWLGSHSNCPLCRTPVQPATVHSHTEPCDVSRLEEPGEGCSNSLEPVGCPRKPFSIIVEIPPEVTRVGSRTRR 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04244 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 142 IPR013083 -
Tsu07g04244 193 PANTHER RING-H2 FINGER PROTEIN ATL64 8 147 - -
Tsu07g04244 193 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 8 147 - -
Tsu07g04244 193 CDD RING-H2_EL5_like 90 133 - -
Tsu07g04244 193 Pfam Ring finger domain 90 133 IPR001841 -
Tsu07g04244 193 SMART ring_2 91 132 IPR001841 -
Tsu07g04244 193 ProSiteProfiles Zinc finger RING-type profile. 91 133 IPR001841 -
Tsu07g04244 193 SUPERFAMILY RING/U-box 90 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04244 Tsu-Chr7 47963418 47964829 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04244 11 137 Rapid Response to Elicitors AT3G16720 38.462 1.88e-26 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04244 - - cam:101488632 220.32