Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04241 ATGGGTATCGATTTGAAGGCAGGAGGTAAGTCCAAGAAGACCAAACGAACAGCACCCAAATCCAATGATATCTACCTCAAGCTTCTCGTTAAGCTTTACCGTTTCCTTGTTAGGAGGACTGAGAGTAATTTCAATAAGGTTATCCTCAAGCGTCTTTTCATGAGCAAAGTTAACAAGCCACCACTATCACTTTCTAGGTTGATTCGTTACACCAAGGGAAAgGAGGGTAAGATAGCTGTAGTTGTTGGTGCGGTGACCGATGACATTAGGGTTTATGAAGTACCTGCAATCAAGGTAACTGCTCTTAGGTTCACAGAAACTGCCAGAGCTAGAATTGAGAAGGCTGGTGGGGAGTGTCTCACCTTTGATCAGCTCGCTCTTAGAGCTCCTTTAGGCCAGAACACGGTATGTATTTTAATGCTACTATTGTCTGTTTATTGTAATTCTCGGTGTTATTGTTTTGTCAAAATTGTGGTAGTTTTATCAGTTTAG 492 0.4167 MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTESNFNKVILKRLFMSKVNKPPLSLSRLIRYTKGKEGKIAVVVGAVTDDIRVYEVPAIKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVCILMLLLSVYCNSRCYCFVKIVVVLSV 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04241 163 Pfam Ribosomal protein 60S L18 and 50S L18e 2 137 IPR021131 -
Tsu07g04241 163 PANTHER 60S RIBOSOMAL PROTEIN L18-2-LIKE 1 138 - -
Tsu07g04241 163 SUPERFAMILY Ribosomal proteins L15p and L18e 20 137 IPR036227 -
Tsu07g04241 163 Gene3D - 1 145 - -
Tsu07g04241 163 PANTHER 60S RIBOSOMAL PROTEIN L18 1 138 IPR000039 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04241 Tsu-Chr7 47939176 47940486 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04241 3 138 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 76.642 1.72e-70 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04241 K02883 - gmx:100499789 253.832