Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04236 ATGGCTCCTTCTTTCGTAAACGCTAAGGCTTGTTCTGCTATTGTCCTTGAAGGTTTCTCTAACACTCTCACAAGcCCAAAGAATGAATACAAGGGTCCGGATGATGGGCGGCAACGGTTTTTGCTTGAACTGGAGTTTATTCAATGTCTTGCTAATCCTACCTACATCCACTatTTGGCTCAGAACCGGTATTTTGCGAATGAAGCATTCATTAGATACTTAAAGTATCTTCAATACTGGCAACGTCCTGAATATATTAAGTTTATTAGGTATCCTCAATGCCTCTATTTTCTCGAGCTTCTTCAGAATGCAAATTTTCGTAATGCAATGGCATATCctactgatctttaccttgatcagagtcgaccagacggtggtgcacggtggTTGCTGATGTCCGACAGCTCCAAtGCTAATAATGTTGAGGGTTTGGATCTTCAACGTCGAGCGAAGGGTACGTCGACGAAGAAGCCCCTTGCTCGCAAGGCGATGTCGACGACCCGTTCGTTTAGAGGAAACAAGTTGTCGAGATTCGTCGAGGAGAGGAACGTTTGA 555 0.3946 MAPSFVNAKACSAIVLEGFSNTLTSPKNEYKGPDDGRQRFLLELEFIQCLANPTYIHYLAQNRYFANEAFIRYLKYLQYWQRPEYIKFIRYPQCLYFLELLQNANFRNAMAYPTDLYLDQSRPDGGARWLLMSDSSNANNVEGLDLQRRAKGTSTKKPLARKAMSTTRSFRGNKLSRFVEERNV 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04236 184 Pfam SOH1 38 113 IPR008831 GO:0003712|GO:0006355|GO:0016592
Tsu07g04236 184 Gene3D Mediator of RNA polymerase II, submodule Med31 (Soh1) 26 121 IPR038089 -
Tsu07g04236 184 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 21 115 - -
Tsu07g04236 184 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 21 115 IPR008831 GO:0003712|GO:0006355|GO:0016592
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04236 Tsu-Chr7 47902549 47903872 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SOH1 Tsu07g04236 Med31 1.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04236 K15153 - tcc:18605251 176.792