Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04231 ATGAGTAGACGCTCCAGCAGAACCGTCTATGTTGGGAATTTACCTGGTGATATCCgtgaaagagaagttgaagaTTTATTTATGAAGtaTGGACACATAACTCACATTGACCTAAAGGTTCCACCAAGGCCCCCTGGTTATGCATTCGTAGAGTTTGAAGATGCTCAAGATGCTGAGGATGCAATTCGCGGGCGTGATGGCTATGATTTTGATGGGCACCGGTTACGGGTGGAGGCTGCTCATGGTGGTCGTGGTACTGGTAATTCGTCTTCAAGAGATCGATACAGTAGTCATAGCAATGGCCGGGGTGGACGTGGAGTATCCAGACGCTCTGAGTATCGTGTTCTAGTCAATGGATTGCCCTCTTCTGCATCCTGGCAGGATCTTAAGGATCACATGCGAAAAGCAGGGGATGTTTGCTTTTCACAAGTTTTTCATGATGGAAGGGGTACTACTGGGATTGTGGATTACACAAACTACGATGATATGAAATATGCTATCAAAAAGCTTGATGACTCTGAGTTCCGAAATGCATTTTCCAAGTCTTATGTTCGAGTGAGGGAGTATGATTCGAGGCGGGACTCTAGAAGTCCGAGTCGTGGCCCTTCTCATTCTAGAGGAAGAAGCTACAGTCGAAGCCGCAGCCGTAGTCGCAGCCGCAGTCCAGCCCATAGCCAAAGTAAATCTCCTAAGGGTAAATCCTCACAACGTTCGCCAGCTAAATCTCCAGCAAGATCAGTTTCTCGTTCTCGCTCGAGATCTCGATCCCGTTCTTTATCCGGATCACGTTCAAGGTCTAGGTCTCCATTACCTCTGCGTAATAAAAGCCCCAAAAAGCGCAGTGCTAGCAGGAGTCCAAGTAGGAGCAGGAGCCGGAGCAAGAGTTTGTCCAGATGA 897 0.4705 MSRRSSRTVYVGNLPGDIREREVEDLFMKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVEAAHGGRGTGNSSSRDRYSSHSNGRGGRGVSRRSEYRVLVNGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKSYVRVREYDSRRDSRSPSRGPSHSRGRSYSRSRSRSRSRSPAHSQSKSPKGKSSQRSPAKSPARSVSRSRSRSRSRSLSGSRSRSRSPLPLRNKSPKKRSASRSPSRSRSRSKSLSR 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04231 298 SMART rrm1_1 8 78 IPR000504 GO:0003723
Tsu07g04231 298 SMART rrm1_1 114 185 IPR000504 GO:0003723
Tsu07g04231 298 CDD RRM2_SF2_plant_like 113 188 - -
Tsu07g04231 298 Gene3D - 113 190 IPR012677 -
Tsu07g04231 298 MobiDBLite consensus disorder prediction 272 287 - -
Tsu07g04231 298 MobiDBLite consensus disorder prediction 79 110 - -
Tsu07g04231 298 MobiDBLite consensus disorder prediction 186 298 - -
Tsu07g04231 298 MobiDBLite consensus disorder prediction 207 221 - -
Tsu07g04231 298 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 3 290 - -
Tsu07g04231 298 PANTHER PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN 3 290 - -
Tsu07g04231 298 SUPERFAMILY RNA-binding domain, RBD 5 178 IPR035979 GO:0003676
Tsu07g04231 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Tsu07g04231 298 Gene3D - 2 112 IPR012677 -
Tsu07g04231 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 191 IPR000504 GO:0003723
Tsu07g04231 298 MobiDBLite consensus disorder prediction 222 247 - -
Tsu07g04231 298 MobiDBLite consensus disorder prediction 186 201 - -
Tsu07g04231 298 CDD RRM1_SF2_plant_like 8 78 - -
Tsu07g04231 298 MobiDBLite consensus disorder prediction 84 104 - -
Tsu07g04231 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Tsu07g04231 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 177 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04231 Tsu-Chr7 47850347 47855618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04231 3 80 Eukaryotic Initiation Factors Gene Family AT3G11400 34.568 3.29e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04231 K12890 - gmx:100789847 339.347