Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04228 ATGAAGTTCTGCAAAAAATACCAGGAATACATGCAAGGACAGAAGCAGAAGAAGCTTCCTGAGGTTGGATTcaaaaagcttaaaaaaatcttgaagaagTGCCGTAGAGATTCTTCTCAATCCCATAAACCATCTCAAACATTTCCCAACCAATGCACAGTGTGTGATGGAACATTCTTCCCTTCACTTCTTAGTGAAATGTCTGAGATAGTTGGTTGCTTTAATCAACGTGCACAGAAATTGCTTGAGCTGCATCTTGCTTCTGGTTTTAAAAAGTACATTTTATGGTTCAAAGGAaaagttcataaaaatcatACTGCTCTTATTCAAGAAGGTGAAGATCTTGTTACTTATGCACTCATAAACGCCACCGCAATCCGAAAAATCCTAAAGAAATATGATAAGATTCATTATTCGAAGCAAGGACAATTGTTTAAGTCACGAGTTCAAAGTATGCACAAGGAAATTCTTCAAAGTCCATGGCTTTGCGAACTTATGGCATTCCACATTAATTTAAGAGAAACCAAGGTCGAATCGAAGAAGGAAACGGCTTTATTTGATGAATGTCGCCTCACATTTAAGGATGGAAAACCATCACTTACTTGTGACCTCTTTGATTCTATCAAAATTGATCTTGACTTGACTTGTTCTATATGCTTGGACACAGTGTTTGATCCAGTTTCTCTGACTTGCGGTCATATATACTGTTACATTTGTGCTTGCTCAGCTGCATCAGTATCAATTGTCGATGGACTTAAGGAGGCAAATCCTAAAGAAAGGTGTCCTCTATGCCGAGAGCGTGCAGTTTATGGAGGTGCTGTACACTTGGAAGAACTAAATATTCTGTTAGGCCGAAGCTGTCAAGAATACTGGGAACAACGGCTTCAATCAGAGAGGGTAGAGAGGATTAAGCAAATAAAGGAACATTGGGATTCACAGTGTAGAGCTTTCATGGGCGTCTAA 963 0.378 MKFCKKYQEYMQGQKQKKLPEVGFKKLKKILKKCRRDSSQSHKPSQTFPNQCTVCDGTFFPSLLSEMSEIVGCFNQRAQKLLELHLASGFKKYILWFKGKVHKNHTALIQEGEDLVTYALINATAIRKILKKYDKIHYSKQGQLFKSRVQSMHKEILQSPWLCELMAFHINLRETKVESKKETALFDECRLTFKDGKPSLTCDLFDSIKIDLDLTCSICLDTVFDPVSLTCGHIYCYICACSAASVSIVDGLKEANPKERCPLCRERAVYGGAVHLEELNILLGRSCQEYWEQRLQSERVERIKQIKEHWDSQCRAFMGV 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04228 320 ProSiteProfiles SPX domain profile. 1 147 IPR004331 -
Tsu07g04228 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 318 IPR013083 -
Tsu07g04228 320 SUPERFAMILY RING/U-box 209 268 - -
Tsu07g04228 320 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 320 - -
Tsu07g04228 320 CDD SPX_BAH1-like 2 143 - -
Tsu07g04228 320 Pfam Zinc finger, C3HC4 type (RING finger) 213 266 - -
Tsu07g04228 320 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 320 IPR033326 -
Tsu07g04228 320 SMART ring_2 216 264 IPR001841 -
Tsu07g04228 320 ProSiteProfiles Zinc finger RING-type profile. 216 265 IPR001841 -
Tsu07g04228 320 ProSitePatterns Zinc finger RING-type signature. 231 240 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04228 Tsu-Chr7 47829872 47833004 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04228 213 265 C3H Transcription Factor Family AT4G28270 37.931 4.18e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04228 K16275 - gmx:100787904 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03813 01 45895586 45899240 Tsu07g04228 07 47829872 47833004 PCT