Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04206 atgtcaaatatttCAGGTGATGAAGGAAGTTTCTCCTCAGGAAACAATGGAGAAGAAGCTTATGATGAAAGTAAGCTGCAACAAGTGCAAAATAATCTCAATGACACAGATTCAGGACCATCTGGTGCTTCTAATAGCAATAGCTCAACTAATCAACAACTAaccaagaagaaaagaaacctTCCTGGAACACCAGGCAAATATCCTAGTGCTGAAGTTGTTGCATTATCACCAACAACATTAATGGCAACAAATAGATTTGTGTGTGAGATATGCAACAAAGGGTTTCAGAGGGACCAAAATCTTCAGTTACATCGAAGAGGTCACAATCTTCCATGGAAACTTAGACAAAGAACAAGCGCGGAGGTGAAGAAAAAGGTGTATGTCTGCCCTGAACCATCATGTGTCCATCATAACCCAGCTCGTGCATTAGGCGACCTTACTggcataaaaaaacattttagcCGCAAACATGGCgaaaagaaatggaaatgtGACAAATGCTCTAAAAGATATGCTGTTCAATCTGATTGGAAGGCACACCAGAAAACTTGTGGTACAAGGGAATACAAATGTGATTGTGGAACCATATTTTCTAGGAGAGATAGTTTTATAACTCATAGAGCTTTCTGTGATGCATTAACTGAAGAAAACAACAGAGTGAACCAAGGATTAGGATTAACTAGTGGCATGCCACCAAACTTACAAAATCAAATGCATGATCCTATCTCTACTATGCCTCTAAAACCAAATTCCAACACTTCATCAGAATTAAACAATGAATATGACCCTAAAAATTCACTAAAATCCCCAATTCAAGAACATATTCCAACACCATTTAGATCAAACAATGCATGTGGTGGCATGTTTTCAACTAGTGCAGGTGCACTTTTTGGTGGCCCAAAAACCTTACCTCCCTCTTCTTCATCGCTTCAACTCAGTTCCAATAGTTTCAATTACTTCAACGACAATAAAACCGGAGGACTAATTTGTGGCTCGGCTCAAATGTCGGCAACCGCTTTATTACAAAAAGCGGCACAAATAGGTTCTACTTCAAGCAATAGTGGTAATTGTAATTCCTCCATGATGCAGAAAAGCTTTGTTAGTAGTATGATTAGTCCTAATCATGTTTCTGGTCCCATAATGATGAACCAACCCTCTTATGAACACTTTAATCCAATAAACCATAATGATTTATCTAACATGGCTGGTGTTAGTGGTGGTGGAGCATTCACAAGTCAACTATTTCAAAACAATACTAATGTGGCTACAATGAATAATGATATTGGAATGTTTAGTCAAATATCAATGGGAAATGATCATAGTAATGGATTGATGAAGAATATGGCAGAGAGTAACCAATTAGTTCATGATTTCTTGGGAATTGGTGGTTCAAATTCAAGTTTGCAtgaaccacaacaacaacagcagcaacaaAGATTGGAAGCATTAACTCATCAAAGATTGGACATTATGAATGAttttcatcaccatcatcatcatcttccacaTGATGATTCTGTTATGGAGAAATCAATTTGGGATGTTTGA 1551 0.3469 MSNISGDEGSFSSGNNGEEAYDESKLQQVQNNLNDTDSGPSGASNSNSSTNQQLTKKKRNLPGTPGKYPSAEVVALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSAEVKKKVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQGLGLTSGMPPNLQNQMHDPISTMPLKPNSNTSSELNNEYDPKNSLKSPIQEHIPTPFRSNNACGGMFSTSAGALFGGPKTLPPSSSSLQLSSNSFNYFNDNKTGGLICGSAQMSATALLQKAAQIGSTSSNSGNCNSSMMQKSFVSSMISPNHVSGPIMMNQPSYEHFNPINHNDLSNMAGVSGGGAFTSQLFQNNTNVATMNNDIGMFSQISMGNDHSNGLMKNMAESNQLVHDFLGIGGSNSSLHEPQQQQQQQRLEALTHQRLDIMNDFHHHHHHLPHDDSVMEKSIWDV 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04206 516 Gene3D Classic Zinc Finger 69 133 - -
Tsu07g04206 516 SUPERFAMILY beta-beta-alpha zinc fingers 86 184 IPR036236 -
Tsu07g04206 516 Gene3D Classic Zinc Finger 141 221 - -
Tsu07g04206 516 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 497 - -
Tsu07g04206 516 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Tsu07g04206 516 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 109 IPR013087 -
Tsu07g04206 516 MobiDBLite consensus disorder prediction 1 69 - -
Tsu07g04206 516 MobiDBLite consensus disorder prediction 1 59 - -
Tsu07g04206 516 SMART c2h2final6 128 158 IPR013087 -
Tsu07g04206 516 SMART c2h2final6 163 183 IPR013087 -
Tsu07g04206 516 SMART c2h2final6 87 109 IPR013087 -
Tsu07g04206 516 Pfam Zinc finger, C2H2 type 87 109 IPR013087 -
Tsu07g04206 516 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 1 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04206 Tsu-Chr7 47702901 47705344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04206 32 353 IDZ Gene Family AT3G50700 53.561 2.12e-108 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu07g04206 zf-C2H2 0.0052 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04206 - - cam:101505978 749.584