Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04186 ATGGGTGATTCTCCTAGAAAAAACTCTCGACCCTGTGATTACTGTGGCCATTCAACCGCAGTTCTATACTGCAGAGCAGATTCAGCAAAACTGTGTTTCTCTTGTGACCGTGAAGTTCACTCCACAAACCAACTTTTCTCCAAACACACACGCTCTTTAATCTGTGATTCATGCGATGATTCACCAGCTACAATCCTCTGTTCAACAGAATCCTCTGTTTTCTGTCAAAACTGTGACTGGGAAAAACACAATCTTTCACTTTCTTCTCCACATGAACGAAGACCTCTTGAAGGTTTTACAGGGTGCCCTTCTGTAACTGAGCTTTTATCGATTTTGGGGTTGCAGGATATTGGGAAAAAATCGTTGCTTTTGCCTCAGGAAAGTGTTGGAGATGGTTATGTTGGGTATGAGATTGAAGGGCTTTCTGATTTATTTGTTTGGGATGCTCCTACTTTTGTTAGTCTTGATGATCTTATTTctacttctccttcttctcatAATTATAGTGCTATGGAGGTTCCTCCTTTGCCCAAgAATCGTAAAGCTGCTTGTGGTAGACACAGAGAAGAGATTTTAAATCAGCTTCGTGGGTTGACGAAGTCTGAGCCCTATGATCCTGAAGAGTATATACCACGGGCAAATTTATCTACAGGTTTTGAACGCGACATAAAGGCTGATATTGTTCCTTCAAGTGAGTGGCTCAGAGAAAGCAGTGAGCCTATGTATCAAGTTGTTCCTGATACATCATTCATAGCTTATACCGAAGATATTCCAGTTAATCATTCCGTATCTGCTGTTGGGGAGCCTCATACTCATGGTAACAACGAAGGGACGCCTTCAGAATCTCTTAAGTCTGAAATCTTATCAACTACTCCTAAAGCTGTTCCACCTCCATATGAGATAGCGAGTCAAGAACGGGATTCTGCATTGTTACGGTacaaacagaagaagaaaacaagaaGATACGACAAGCATATAAGGTATGAATCACGTAAAGTTCGGGCAGAGACCAGGACACGAGTTAAGGGCCGATTTGCAAAGATAGAGCACTGA 1053 0.4036 MGDSPRKNSRPCDYCGHSTAVLYCRADSAKLCFSCDREVHSTNQLFSKHTRSLICDSCDDSPATILCSTESSVFCQNCDWEKHNLSLSSPHERRPLEGFTGCPSVTELLSILGLQDIGKKSLLLPQESVGDGYVGYEIEGLSDLFVWDAPTFVSLDDLISTSPSSHNYSAMEVPPLPKNRKAACGRHREEILNQLRGLTKSEPYDPEEYIPRANLSTGFERDIKADIVPSSEWLRESSEPMYQVVPDTSFIAYTEDIPVNHSVSAVGEPHTHGNNEGTPSESLKSEILSTTPKAVPPPYEIASQERDSALLRYKQKKKTRRYDKHIRYESRKVRAETRTRVKGRFAKIEH 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04186 350 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 7 350 - -
Tsu07g04186 350 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 13 7 350 - -
Tsu07g04186 350 ProSiteProfiles CCT domain profile. 306 348 IPR010402 GO:0005515
Tsu07g04186 350 CDD Bbox1_BBX-like 11 54 - -
Tsu07g04186 350 Pfam B-box zinc finger 9 52 IPR000315 GO:0008270
Tsu07g04186 350 Pfam B-box zinc finger 53 96 IPR000315 GO:0008270
Tsu07g04186 350 SMART bboxneu5 7 54 IPR000315 GO:0008270
Tsu07g04186 350 SMART bboxneu5 55 96 IPR000315 GO:0008270
Tsu07g04186 350 MobiDBLite consensus disorder prediction 267 285 - -
Tsu07g04186 350 ProSiteProfiles Zinc finger B-box type profile. 7 54 IPR000315 GO:0008270
Tsu07g04186 350 Pfam CCT motif 306 347 IPR010402 GO:0005515
Tsu07g04186 350 MobiDBLite consensus disorder prediction 265 285 - -
Tsu07g04186 350 ProSiteProfiles Zinc finger B-box type profile. 50 96 IPR000315 GO:0008270
Tsu07g04186 350 CDD Bbox1_BBX-like 54 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04186 Tsu-Chr7 47540776 47544058 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04186 7 321 C2C2-CO-like Transcription Factor Family AT2G47890 41.304 3.36e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Tsu07g04186 zf-B_box 5.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04186 - - mtr:MTR_7g108150 633.639