Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04175 ATGTTGTCCTTGAATCCAGAACACAAACTCTTCATTGGCATGCTTCCAAAGAACGTTTCTGAAGTTGAAGTATCTGCACTTTTCTCCAAGTATGGAACTATAAAGGATTTACAAATTTTAAGAGGTTCTCAGCAGACAAGTAAAGGTTGTGCATTTTTGAAGTATGAAACCAAAGAACAAGCTCTTGCTGCTTTGGAGGCAATCAATGGAAAACACAAAATGGAGGGTTCAAGTGTTCCTTTAGTTGTCAAATGGGCTGATACTGAAAAGGAAAGACAAGCCCGAAGGGCTCAGAAAGCACAGTCCCAAGCTTCTAATGTGGGACATGCTGATTCTCAGCATCCTTCATTGTTTGGAGCCATGCCTATGGGTTATGTTCCTCCATATAATGGTTATGGTTATCAGCCTCCTGCAAGCTATGGGCTCATGCCATACCGCATGCCGCCAATGCAGAATCAACCCGGTTACCCCAATATGATGCCCCACATGAATCAAGGAAATGCATTGCGGCCTGATCTTGGCCCCAATATGAATCCTAGAAACTATCATGTGCCTCCTGCAAGTTATGTTGGATCTTATCCTGCTGTGCCAGGTCTACAACATCCAATGGCATATCCTGGAGGAATGATTAGTCCAAGACCTATGAATAGTCCTCCTGGTTCTGTTTCGCCTTCTGGTGGAAATGGCAACTCCGCCACATCATCAGGGTCCAGCAGAAATTCTGGCGGTGGTCAGATTGAAGGACCACCTGGCGCCAATCTATTTATCTATCACATACCTCAAGAATTTGGAGATCAAGAGCTTGCTAATGCTTTTCAACCATTTGGTAGAGTTTTGAGTGCTAAAGTTTTCGTTGACAAAGCAACCGGAGTCAGCAAATGTTTTGGCTTTGTAAGCTATGATTCCCCAGAAGCTGCTCAAGCTGCCATTAGTATGATGAATGGAATCCAATTAGAAGGTAAGAAATTAAAGGTTCAGCATAAGAGGGACAACAAACCCGGTAAACCTTACTGA 1014 0.4349 MLSLNPEHKLFIGMLPKNVSEVEVSALFSKYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQASNVGHADSQHPSLFGAMPMGYVPPYNGYGYQPPASYGLMPYRMPPMQNQPGYPNMMPHMNQGNALRPDLGPNMNPRNYHVPPASYVGSYPAVPGLQHPMAYPGGMISPRPMNSPPGSVSPSGGNGNSATSSGSSRNSGGGQIEGPPGANLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQAAISMMNGIQLEGKKLKVQHKRDNKPGKPY 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04175 337 MobiDBLite consensus disorder prediction 207 249 - -
Tsu07g04175 337 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 73 IPR000504 GO:0003723
Tsu07g04175 337 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 254 324 IPR000504 GO:0003723
Tsu07g04175 337 Gene3D - 3 97 IPR012677 -
Tsu07g04175 337 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 330 IPR000504 GO:0003723
Tsu07g04175 337 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 7 324 - -
Tsu07g04175 337 CDD RRM3_CELF1-6 254 326 - -
Tsu07g04175 337 SUPERFAMILY RNA-binding domain, RBD 6 332 IPR035979 GO:0003676
Tsu07g04175 337 MobiDBLite consensus disorder prediction 90 113 - -
Tsu07g04175 337 CDD RRM1_2_CELF1-6_like 9 84 - -
Tsu07g04175 337 SMART rrm1_1 253 326 IPR000504 GO:0003723
Tsu07g04175 337 SMART rrm1_1 9 84 IPR000504 GO:0003723
Tsu07g04175 337 MobiDBLite consensus disorder prediction 220 244 - -
Tsu07g04175 337 Gene3D - 223 329 IPR012677 -
Tsu07g04175 337 PRINTS Paraneoplastic encephalomyelitis antigen family signature 13 28 IPR002343 GO:0003723|GO:1990904
Tsu07g04175 337 PRINTS Paraneoplastic encephalomyelitis antigen family signature 28 40 IPR002343 GO:0003723|GO:1990904
Tsu07g04175 337 PRINTS Paraneoplastic encephalomyelitis antigen family signature 69 86 IPR002343 GO:0003723|GO:1990904
Tsu07g04175 337 MobiDBLite consensus disorder prediction 98 112 - -
Tsu07g04175 337 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 88 IPR000504 GO:0003723
Tsu07g04175 337 PANTHER RNA BINDING PROTEIN 7 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04175 Tsu-Chr7 47425249 47428704 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04175 10 94 Eukaryotic Initiation Factors Gene Family AT1G22760 31.765 1.10e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04175 K13207 - gmx:100813239 573.933