Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu07g04162 | ATGTCGAAATTCTTTTCTCAGGGTGGTGGTacttctgatgatgatgacagTGATTTCGATCAATCGGTTGATGATATACCGGTTGAACCTGACAATGAGCCTTCTTCAAATAGGTACATGGTGGATAATGCTAGTGACAGTGATGACGACGATGGCCATAGGCGCACTGTTAAGTCGGCAAAAGATAAGCGATTTGAAGAGATGGCTTCAACGGTTGACCAGATGAAGAATGCAATGAAGATCAATGATTGGGTGAGTTTGCAAGAGAGTTTTGATAAGATCAACAAACAACTCGAGAAAGTGATGCGTGTTGCTGAGAATGATAAGGTCCCTAATCTTTATATTAAGGCTCTTGTCTTGTTGGAAGATTTCTTGGCTCAGGCTTTGGCAAATAAGGATGCCAAGAAGAAGATGAGTAGTAGCAATGCCAAAGCCTTGAACTCAATGAAGcagaaattgaagaagaatAATAAGCAATATGAAGAGCTGATTACTAAATGCAGGGAGAGTCCTGAGAGCGAGGAGGATAATAATCAGGATGAGCCGAGCGATGACGACGACGATGATGATAGTGATGGCGATTTGATCGAGCCCGAGCAGCTTGGGAGGCGGGAACCGAGATCGGATTCAGAAGAGGGAAGGGATGATGCTGGTGATGGGCCTTGGGACCAAAAGCTTAGCAGGAAAGACAGACTTTTGGATAGACAGCTCATGAAAGACCCTAGGGAGGTCACATGGGATATTGTTAACAAGAAGTTTAAAGAGATTCTGGCAGCTAGGGGAAAGAGGGGAACTGGGAGGTTTGAACAGGTCGAACAACTTACCTTCTTAACAAAAGTGGCTAAAACACCAGCACAAAAGCTTGAAATTCTTTTCAGTGTGGTTTCTGCTCAGTTTGATGTTAATCCAGGGCTCAGTGGCCATATGCCCATAACTGTTTGGAAAAAATGTGTTCAGAATATGCTGCTCATCCTTGATATTCTAGTTCAATTTCCAAACATTAAGGTCGATGATTCAGTGGAGCCAGATGAGAATGAAACTCAAAAAGGGGTTGACTATGATGGACCAATTAGGATTTGGGGTAACTTAGTCGCCTTCTTAGAAAAAATAGATACTGAGTTTTTCAAAAGCTTGCAGTGCATAGATCCTCATACACGAGAGTACGTCCAGAGACTTAGAGATGAGCCCATGTTTTTGGTTCTTGCTCAAAATGTCCAGGAATATCTTGAAAGGAGTGGAGATTTCAAATCATCTTCTAAGGTGGCCTTGAGGAGGGTTGAACTCATTTACTACAAACCACAAGAGGTTTATGATGCCATGAGAAAATTGGCTGAGCTGTCTGAAGATGGAGATAATGAAGGGGAGGCTAACGAGGAGTCCACAGGGTTTGTGGATACAAGGATTCCTACTGCATTTGTTGTTACTCCAGAGCTTGTGTCTCGTAAACCCACTTTCCCGGAGAATAGTAGGGCCCTAATGGATGTACTAGtttcacatatatacaaatatggTGACGAGCGCACTAAAGCACGGGCAATGCTTTGTGATATATATCACCATGCTCTCCTTGACGAGTTCTCAATAGCCCGTGATCTGCTGCTTATGAGTCATTTGCAAGATAATGTTCAGCACATGGACATTTCAACACAGATACTTTTTAACAGGGCTATGTCACAGTTAGGTCTTTGCACTTTTCGGATTGGATTGATTTCTGAAGCACATGGCTGCCTATCTGAACTCTATTCAGGTGGAAGGGTGAAAGAGTTGCTTGCACAAGGTGTGTCACAAAGTCGTTATCATGAGAAGACTCCAGAACAGGAAAGGTTGGAACGAAGACGCCAGATGCCATATCATATGCACATAAATCTTGAGCTCCTGGAAGCAGTGCATCTTATATCGGCTATGCTGCTGGAGGTTCCCAATATGGCAGCCAATGTTCATGATGCAAAGCATAGGGTCATCAGTAAGAATTTCCGCCGTTTGCTTGAGGTCAGTGATAGACAAACGTTGACTGGTCCTCCTGAGAGTGTCCGAGATCACATTATGGCTGCAACTAGGGTTCTTATAAAAGGAGACTTCAACAAGGCTTTTGAAGTTATTAGCTCTCTTGATGTATggaaatttgttaaaaatagaGACACCGTATTGGAAATGCTGAAGGACAAAATCAAGGAAGAAGCACTTAGGACGTATCTCCTTACCTTCTCTTCATCCTATGAGTCCCTGAGTTTGGATCAAGTCACGAAATTTTTCGACCTAGCTGTTCCTCGTACTCATAGCATTGTGAGTAGGATGATGATCAACGAGGAGCTTCATGCAAGTTGGGACCAGCCAACTGGGTGCATTGTCTTCCAAAATGTTGAGCCCTCTAGGCTGCAAGCATTGGCATTCCAATTGACAGAGAAATTATCTATCCTTGCAGAGAGTAATGAAAGAGCCACAGAGGCAAGAATGGGTGGTGGATTGGATCTGCCTCCAAGACGAAGGGATGGACAGGACTATGCTGCTGCTGTTGGCGGAGGTGGTGGAATAGGGCCTTCAGGTGGTAGGTGGCAGGACTTGTCCTATTCTCAGCCACGTCAAGGGAGTGGACGTGCAGGATATGGTAATGCTGGTGGAAGGCCATTGGCATATGGTCAAGCAGCTAGGGGTGGCTACTCGAGGGACCGAGTTGGGCGTGCTGGTTATCAGAGTTCAGGGAGGAGTAATCAAGGGGGTTCAGGACTAAGGGGACCCCAGGGAGATGTATCTTCTCGCATGGTTAGCCTTAAGGGAGTTCGTGCTTAA | 2787 | 0.4377 | MSKFFSQGGGTSDDDDSDFDQSVDDIPVEPDNEPSSNRYMVDNASDSDDDDGHRRTVKSAKDKRFEEMASTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVAENDKVPNLYIKALVLLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEELITKCRESPESEEDNNQDEPSDDDDDDDSDGDLIEPEQLGRREPRSDSEEGRDDAGDGPWDQKLSRKDRLLDRQLMKDPREVTWDIVNKKFKEILAARGKRGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLSGHMPITVWKKCVQNMLLILDILVQFPNIKVDDSVEPDENETQKGVDYDGPIRIWGNLVAFLEKIDTEFFKSLQCIDPHTREYVQRLRDEPMFLVLAQNVQEYLERSGDFKSSSKVALRRVELIYYKPQEVYDAMRKLAELSEDGDNEGEANEESTGFVDTRIPTAFVVTPELVSRKPTFPENSRALMDVLVSHIYKYGDERTKARAMLCDIYHHALLDEFSIARDLLLMSHLQDNVQHMDISTQILFNRAMSQLGLCTFRIGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLISAMLLEVPNMAANVHDAKHRVISKNFRRLLEVSDRQTLTGPPESVRDHIMAATRVLIKGDFNKAFEVISSLDVWKFVKNRDTVLEMLKDKIKEEALRTYLLTFSSSYESLSLDQVTKFFDLAVPRTHSIVSRMMINEELHASWDQPTGCIVFQNVEPSRLQALAFQLTEKLSILAESNERATEARMGGGLDLPPRRRDGQDYAAAVGGGGGIGPSGGRWQDLSYSQPRQGSGRAGYGNAGGRPLAYGQAARGGYSRDRVGRAGYQSSGRSNQGGSGLRGPQGDVSSRMVSLKGVRA | 928 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu07g04162 | 928 | MobiDBLite | consensus disorder prediction | 132 | 227 | - | - | |
Tsu07g04162 | 928 | MobiDBLite | consensus disorder prediction | 13 | 27 | - | - | |
Tsu07g04162 | 928 | Pfam | Eukaryotic translation initiation factor 3 subunit 8 N-terminus | 43 | 649 | IPR008905 | GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
Tsu07g04162 | 928 | SUPERFAMILY | "Winged helix" DNA-binding domain | 713 | 789 | IPR036390 | - | |
Tsu07g04162 | 928 | SMART | PINT_4 | 718 | 806 | IPR000717 | - | |
Tsu07g04162 | 928 | MobiDBLite | consensus disorder prediction | 814 | 928 | - | - | |
Tsu07g04162 | 928 | MobiDBLite | consensus disorder prediction | 1 | 65 | - | - | |
Tsu07g04162 | 928 | Coils | Coil | 143 | 170 | - | - | |
Tsu07g04162 | 928 | MobiDBLite | consensus disorder prediction | 174 | 195 | - | - | |
Tsu07g04162 | 928 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C | 2 | 927 | - | - | |
Tsu07g04162 | 928 | MobiDBLite | consensus disorder prediction | 896 | 911 | - | - | |
Tsu07g04162 | 928 | MobiDBLite | consensus disorder prediction | 196 | 227 | - | - | |
Tsu07g04162 | 928 | MobiDBLite | consensus disorder prediction | 134 | 153 | - | - | |
Tsu07g04162 | 928 | Hamap | Eukaryotic translation initiation factor 3 subunit C [EIF3C]. | 1 | 867 | IPR027516 | GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
Tsu07g04162 | 928 | PANTHER | EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED | 2 | 927 | IPR027516 | GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
Tsu07g04162 | 928 | MobiDBLite | consensus disorder prediction | 154 | 173 | - | - | |
Tsu07g04162 | 928 | Pfam | PCI domain | 657 | 785 | IPR000717 | - | |
Tsu07g04162 | 928 | ProSiteProfiles | PCI domain profile. | 617 | 789 | IPR000717 | - | |
Tsu07g04162 | 928 | SMART | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 718 | 806 | - | - | |
Tsu07g04162 | 928 | MobiDBLite | consensus disorder prediction | 43 | 65 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu07g04162 | Tsu-Chr7 | 47319831 | 47324567 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu07g04162 | 2 | 928 | Eukaryotic Initiation Factors Gene Family | AT3G56150 | 68.884 | 0.0 | 1165 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu07g04162 | K03252 | - | gmx:100781967 | 1427.54 |