Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04162 ATGTCGAAATTCTTTTCTCAGGGTGGTGGTacttctgatgatgatgacagTGATTTCGATCAATCGGTTGATGATATACCGGTTGAACCTGACAATGAGCCTTCTTCAAATAGGTACATGGTGGATAATGCTAGTGACAGTGATGACGACGATGGCCATAGGCGCACTGTTAAGTCGGCAAAAGATAAGCGATTTGAAGAGATGGCTTCAACGGTTGACCAGATGAAGAATGCAATGAAGATCAATGATTGGGTGAGTTTGCAAGAGAGTTTTGATAAGATCAACAAACAACTCGAGAAAGTGATGCGTGTTGCTGAGAATGATAAGGTCCCTAATCTTTATATTAAGGCTCTTGTCTTGTTGGAAGATTTCTTGGCTCAGGCTTTGGCAAATAAGGATGCCAAGAAGAAGATGAGTAGTAGCAATGCCAAAGCCTTGAACTCAATGAAGcagaaattgaagaagaatAATAAGCAATATGAAGAGCTGATTACTAAATGCAGGGAGAGTCCTGAGAGCGAGGAGGATAATAATCAGGATGAGCCGAGCGATGACGACGACGATGATGATAGTGATGGCGATTTGATCGAGCCCGAGCAGCTTGGGAGGCGGGAACCGAGATCGGATTCAGAAGAGGGAAGGGATGATGCTGGTGATGGGCCTTGGGACCAAAAGCTTAGCAGGAAAGACAGACTTTTGGATAGACAGCTCATGAAAGACCCTAGGGAGGTCACATGGGATATTGTTAACAAGAAGTTTAAAGAGATTCTGGCAGCTAGGGGAAAGAGGGGAACTGGGAGGTTTGAACAGGTCGAACAACTTACCTTCTTAACAAAAGTGGCTAAAACACCAGCACAAAAGCTTGAAATTCTTTTCAGTGTGGTTTCTGCTCAGTTTGATGTTAATCCAGGGCTCAGTGGCCATATGCCCATAACTGTTTGGAAAAAATGTGTTCAGAATATGCTGCTCATCCTTGATATTCTAGTTCAATTTCCAAACATTAAGGTCGATGATTCAGTGGAGCCAGATGAGAATGAAACTCAAAAAGGGGTTGACTATGATGGACCAATTAGGATTTGGGGTAACTTAGTCGCCTTCTTAGAAAAAATAGATACTGAGTTTTTCAAAAGCTTGCAGTGCATAGATCCTCATACACGAGAGTACGTCCAGAGACTTAGAGATGAGCCCATGTTTTTGGTTCTTGCTCAAAATGTCCAGGAATATCTTGAAAGGAGTGGAGATTTCAAATCATCTTCTAAGGTGGCCTTGAGGAGGGTTGAACTCATTTACTACAAACCACAAGAGGTTTATGATGCCATGAGAAAATTGGCTGAGCTGTCTGAAGATGGAGATAATGAAGGGGAGGCTAACGAGGAGTCCACAGGGTTTGTGGATACAAGGATTCCTACTGCATTTGTTGTTACTCCAGAGCTTGTGTCTCGTAAACCCACTTTCCCGGAGAATAGTAGGGCCCTAATGGATGTACTAGtttcacatatatacaaatatggTGACGAGCGCACTAAAGCACGGGCAATGCTTTGTGATATATATCACCATGCTCTCCTTGACGAGTTCTCAATAGCCCGTGATCTGCTGCTTATGAGTCATTTGCAAGATAATGTTCAGCACATGGACATTTCAACACAGATACTTTTTAACAGGGCTATGTCACAGTTAGGTCTTTGCACTTTTCGGATTGGATTGATTTCTGAAGCACATGGCTGCCTATCTGAACTCTATTCAGGTGGAAGGGTGAAAGAGTTGCTTGCACAAGGTGTGTCACAAAGTCGTTATCATGAGAAGACTCCAGAACAGGAAAGGTTGGAACGAAGACGCCAGATGCCATATCATATGCACATAAATCTTGAGCTCCTGGAAGCAGTGCATCTTATATCGGCTATGCTGCTGGAGGTTCCCAATATGGCAGCCAATGTTCATGATGCAAAGCATAGGGTCATCAGTAAGAATTTCCGCCGTTTGCTTGAGGTCAGTGATAGACAAACGTTGACTGGTCCTCCTGAGAGTGTCCGAGATCACATTATGGCTGCAACTAGGGTTCTTATAAAAGGAGACTTCAACAAGGCTTTTGAAGTTATTAGCTCTCTTGATGTATggaaatttgttaaaaatagaGACACCGTATTGGAAATGCTGAAGGACAAAATCAAGGAAGAAGCACTTAGGACGTATCTCCTTACCTTCTCTTCATCCTATGAGTCCCTGAGTTTGGATCAAGTCACGAAATTTTTCGACCTAGCTGTTCCTCGTACTCATAGCATTGTGAGTAGGATGATGATCAACGAGGAGCTTCATGCAAGTTGGGACCAGCCAACTGGGTGCATTGTCTTCCAAAATGTTGAGCCCTCTAGGCTGCAAGCATTGGCATTCCAATTGACAGAGAAATTATCTATCCTTGCAGAGAGTAATGAAAGAGCCACAGAGGCAAGAATGGGTGGTGGATTGGATCTGCCTCCAAGACGAAGGGATGGACAGGACTATGCTGCTGCTGTTGGCGGAGGTGGTGGAATAGGGCCTTCAGGTGGTAGGTGGCAGGACTTGTCCTATTCTCAGCCACGTCAAGGGAGTGGACGTGCAGGATATGGTAATGCTGGTGGAAGGCCATTGGCATATGGTCAAGCAGCTAGGGGTGGCTACTCGAGGGACCGAGTTGGGCGTGCTGGTTATCAGAGTTCAGGGAGGAGTAATCAAGGGGGTTCAGGACTAAGGGGACCCCAGGGAGATGTATCTTCTCGCATGGTTAGCCTTAAGGGAGTTCGTGCTTAA 2787 0.4377 MSKFFSQGGGTSDDDDSDFDQSVDDIPVEPDNEPSSNRYMVDNASDSDDDDGHRRTVKSAKDKRFEEMASTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVAENDKVPNLYIKALVLLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEELITKCRESPESEEDNNQDEPSDDDDDDDSDGDLIEPEQLGRREPRSDSEEGRDDAGDGPWDQKLSRKDRLLDRQLMKDPREVTWDIVNKKFKEILAARGKRGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLSGHMPITVWKKCVQNMLLILDILVQFPNIKVDDSVEPDENETQKGVDYDGPIRIWGNLVAFLEKIDTEFFKSLQCIDPHTREYVQRLRDEPMFLVLAQNVQEYLERSGDFKSSSKVALRRVELIYYKPQEVYDAMRKLAELSEDGDNEGEANEESTGFVDTRIPTAFVVTPELVSRKPTFPENSRALMDVLVSHIYKYGDERTKARAMLCDIYHHALLDEFSIARDLLLMSHLQDNVQHMDISTQILFNRAMSQLGLCTFRIGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLISAMLLEVPNMAANVHDAKHRVISKNFRRLLEVSDRQTLTGPPESVRDHIMAATRVLIKGDFNKAFEVISSLDVWKFVKNRDTVLEMLKDKIKEEALRTYLLTFSSSYESLSLDQVTKFFDLAVPRTHSIVSRMMINEELHASWDQPTGCIVFQNVEPSRLQALAFQLTEKLSILAESNERATEARMGGGLDLPPRRRDGQDYAAAVGGGGGIGPSGGRWQDLSYSQPRQGSGRAGYGNAGGRPLAYGQAARGGYSRDRVGRAGYQSSGRSNQGGSGLRGPQGDVSSRMVSLKGVRA 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04162 928 MobiDBLite consensus disorder prediction 132 227 - -
Tsu07g04162 928 MobiDBLite consensus disorder prediction 13 27 - -
Tsu07g04162 928 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 43 649 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Tsu07g04162 928 SUPERFAMILY "Winged helix" DNA-binding domain 713 789 IPR036390 -
Tsu07g04162 928 SMART PINT_4 718 806 IPR000717 -
Tsu07g04162 928 MobiDBLite consensus disorder prediction 814 928 - -
Tsu07g04162 928 MobiDBLite consensus disorder prediction 1 65 - -
Tsu07g04162 928 Coils Coil 143 170 - -
Tsu07g04162 928 MobiDBLite consensus disorder prediction 174 195 - -
Tsu07g04162 928 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 2 927 - -
Tsu07g04162 928 MobiDBLite consensus disorder prediction 896 911 - -
Tsu07g04162 928 MobiDBLite consensus disorder prediction 196 227 - -
Tsu07g04162 928 MobiDBLite consensus disorder prediction 134 153 - -
Tsu07g04162 928 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 1 867 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Tsu07g04162 928 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 2 927 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Tsu07g04162 928 MobiDBLite consensus disorder prediction 154 173 - -
Tsu07g04162 928 Pfam PCI domain 657 785 IPR000717 -
Tsu07g04162 928 ProSiteProfiles PCI domain profile. 617 789 IPR000717 -
Tsu07g04162 928 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 718 806 - -
Tsu07g04162 928 MobiDBLite consensus disorder prediction 43 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04162 Tsu-Chr7 47319831 47324567 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04162 2 928 Eukaryotic Initiation Factors Gene Family AT3G56150 68.884 0.0 1165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04162 K03252 - gmx:100781967 1427.54