Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04161 ATGGCTGAAACCGTCCCTGCTGTCGCTGCTGTCGAAGTTGATCCAAATCTTATTGAGGTCAAGCTCTTCAACAAATGGAGCTTCGACGACGTTGGGGTCAGTGATACATCTCTTCAGGACTACATTGGTGTGTTGCCATCTAAGCATGCAACATATGTTCCTCACACTGCTGGTAGGTACTCGAAGAAGCGATTCAGGAAAGCTCAGTGTCCTATTATTGAGAGGTTGACAAACTCTCTCATGATGCACGGGAGAAACAATGGAAAGAAACTCATGGCTGTTAAGATTATTAAGCATGCTATGGAGATCATCCACTTGCTAACTGACCAGAACCCAATTCAAGTTATTGTTGATGCTGTTGTCAACAGTGGTCCCAGAGAAGATGCAACTAGAATTGGATCTGCTGGagttgttaggaggcaagctgTGGATATTTCACCCCTTCGCAGGGTTAACCAGGCCATATATCTTCTAACAACTGGTGCCCGTGAAGCTGCATTCAGGAACATTAAGACAGTTGCCGAATGTTTAGCTGATGAACTTATTAATGCTGCTAAAGGTTCATCCAACAGCTATGCTATCAAGAAAAAGGATGAGATAGAGAGAGTTGCCAAGGCAAATCGTTAA 627 0.4242 MAETVPAVAAVEVDPNLIEVKLFNKWSFDDVGVSDTSLQDYIGVLPSKHATYVPHTAGRYSKKRFRKAQCPIIERLTNSLMMHGRNNGKKLMAVKIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTVAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04161 208 Gene3D Ribosomal protein S7 domain 3 208 IPR036823 -
Tsu07g04161 208 PANTHER 40S RIBOSOMAL PROTEIN S5 7 208 - -
Tsu07g04161 208 TIGRFAM uS7_euk_arch: ribosomal protein uS7 19 208 IPR005716 GO:0003735|GO:0006412|GO:0015935
Tsu07g04161 208 ProSitePatterns Ribosomal protein S7 signature. 74 100 IPR020606 GO:0003723|GO:0003735|GO:0006412
Tsu07g04161 208 SUPERFAMILY Ribosomal protein S7 21 208 IPR036823 -
Tsu07g04161 208 CDD uS7_Eukaryote 21 208 IPR005716 GO:0003735|GO:0006412|GO:0015935
Tsu07g04161 208 PIRSF RPS7p_RPS7a_RPS5e_RPS7o 1 208 IPR000235 GO:0006412
Tsu07g04161 208 PANTHER RIBOSOMAL PROTEIN S7 7 208 IPR000235 GO:0006412
Tsu07g04161 208 Pfam Ribosomal protein S7p/S5e 66 208 IPR023798 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04161 Tsu-Chr7 47311533 47314761 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04161 19 208 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 91.053 1.77e-132 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04161 K02989 - gmx:100815850 359.762