Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04129 ATGCGGAGTTTCGGAATGATGAACTTGTTATCCCgtatcaaaaaaagaagaacaaagaacAAATTCATcagaaacagaaacaaaaacattctcaaacacaaaaacaaccaaaaccGCATTTCTctaattgaagaagaagaagaagatatagAAGAAGGTTTCAGCATCAAAAGTTCTGCCCCATCACACACTCACGGTGTTCAACCCTTAGGAAATCTCTATTTCAACCCAGGTTCCATCAACTCTAGAGACACTGGTTTAGGTAATCTTCATACTCTTACAGATGAACTTGTTCTTGATATTCTAGGTTTTTTGGATGGTAGTAGTTTAGGTGTTTTAGCTTCTGTGAGTAAATCGTTTTATGTTTTTACCAATCATGAACCCATTTGGAGGAATCTTGTGTTGGAGAATCTTATTGATGGGTTTCAGTATAATGGGTTATGGAAAACTACTTTTGTTTCTGCTTATTACCCTTCATTTGATATTTCGAGTAGTGATCGGAGGAGTTTTAAAGTTAGAGACTTTTATTCTGATTATCTTTTCCAGAGTTGGTTATGTGCTAATCTTGAAATGAAACATGAATGGTTGGAGAGGGATAATATTGTTAGGAAGAGAGGTATTTCGGTTGAAGAATTTGTGAGGAGTTTTGAGGAGGTTAATAAGCCGGTTTTGTTGGAAGGGTGTATTGATAATTGGGATGCATTGAGGAATTGGGATAGAGATTATTTGGTTAAGTTATGTGGTGATGATGTTAAGTTTTCAGTTGGGCCTGTGGAGATGAAGCTTAGGGATTATTTTCGATATTCAGATCAAGTTAGAGAAGAAAGGCCGTTGTATTTGTTTGATCCGAAGTTTGCTGAAAAAGTTCCGAAATTGGGTTTGGAATATGAAGTTCCGGTGTATTTTCGGGAGGACTTGTTTGATGTTTTGGGTAATGAGAGACCTGACTACAGGTGGATTATTATGGGACCAGCTGGATCTGGATCGTCTTTTCACGTTGATCCTAATTCAACTTCAGCTTGGAATGCTGTGATCAAAGGGTCGAAGAAATGGGTATTGTTTCCTCCTGATGTGATTCCGCCTGGTGTTCATCCTAGTCCTGATGGTGCAGACGTGGCATCTCCTGTTTCAATAATTGAATGGTTCATGAACTTTTATGGCGCAACTAAGAATTGGAAAAAGAGACCAATTGAGTGCATATGTAAAGCTGGGGAAGTTATCTTTGTGCCTAATGGATGGTGGCATTTGGTGATTAACCTGGAGGAATCAATTGCCATAACACAAAACTATGTTAGCAGGAGAAATTTGTTAAATGTGTTGGATTTTCTTAAAAGGCCGAACGCGAGCACACTGGTATCTGGAACAGAGGATAGAGTAAATTTGCATGATAAGTTTAAGAATGCTATTGAGGCTTCTTTTCCTGGAGCAATTGATGAACTGAcccaaaaagaagaagagaaaaagatcCAGCAAAGGAAACTTTCCTTCTGGGATTCTGTTGTAGACTCCAATGTGGGAGCTTTCAAGTTCTCTTTCTAG 1539 0.3567 MRSFGMMNLLSRIKKRRTKNKFIRNRNKNILKHKNNQNRISLIEEEEEDIEEGFSIKSSAPSHTHGVQPLGNLYFNPGSINSRDTGLGNLHTLTDELVLDILGFLDGSSLGVLASVSKSFYVFTNHEPIWRNLVLENLIDGFQYNGLWKTTFVSAYYPSFDISSSDRRSFKVRDFYSDYLFQSWLCANLEMKHEWLERDNIVRKRGISVEEFVRSFEEVNKPVLLEGCIDNWDALRNWDRDYLVKLCGDDVKFSVGPVEMKLRDYFRYSDQVREERPLYLFDPKFAEKVPKLGLEYEVPVYFREDLFDVLGNERPDYRWIIMGPAGSGSSFHVDPNSTSAWNAVIKGSKKWVLFPPDVIPPGVHPSPDGADVASPVSIIEWFMNFYGATKNWKKRPIECICKAGEVIFVPNGWWHLVINLEESIAITQNYVSRRNLLNVLDFLKRPNASTLVSGTEDRVNLHDKFKNAIEASFPGAIDELTQKEEEKKIQQRKLSFWDSVVDSNVGAFKFSF 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04129 512 SMART cupin_9 278 447 IPR003347 -
Tsu07g04129 512 PANTHER AND JMJC DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G08170)-RELATED 56 510 - -
Tsu07g04129 512 ProSiteProfiles JmjC domain profile. 287 447 IPR003347 -
Tsu07g04129 512 SMART fbox_2 93 133 IPR001810 GO:0005515
Tsu07g04129 512 Pfam Cupin-like domain 210 430 IPR041667 -
Tsu07g04129 512 SUPERFAMILY F-box domain 85 141 IPR036047 GO:0005515
Tsu07g04129 512 SUPERFAMILY Clavaminate synthase-like 201 444 - -
Tsu07g04129 512 Gene3D - 82 131 - -
Tsu07g04129 512 Gene3D Cupin 135 432 - -
Tsu07g04129 512 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 56 510 - -
Tsu07g04129 512 ProSiteProfiles F-box domain profile. 87 133 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04129 Tsu-Chr7 47099041 47101737 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04129 78 436 Glycosyltransferase AT1G78280 37.940 4.88e-76 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Tsu07g04129 Cupin_8 2.8e-22 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04129 - - lja:Lj1g3v4753250.1 838.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04129 07 47099041 47101737 Tsu07g04129 07 47099041 47101737 ECH