Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04126 atgaaaaacacCATACGTTCCCAACACGTGTACGGCAAATATGGATGCGTTAGATGGGCATTGATGAAAGCTTTGGCCTTCTATTTCTTCTTTGGTTCTCACGGTAAGTGTGGCGGCATGGAGGATGGAAATTATACAAGTGGATTATGGAGAACGAAATCGGAACAACTAGAGTCAGTGATGGAAGATTTCAAGTCGCCACCAGGATCAAGTGAATCAACTGGAGCGGTGGACGGTGGTAGTGGGAGTCTTACAAGGAAGTCGGGCAAGAGGACGTCGCCTGGTGGAAGAAACGCGCACATAAGGAAGGCGAGGAGCGCCCAAACATCGTTGAAGATTGATTTGGATGAGGTAAATAGTGGTGCTGCCCTTAGTAGAGCTTCAAGTTTGGGACTCTCATTCTCCTTTACCGGCTTCTCCGTTCCTCTTGATGAAATCTCTAACTCCAAACCCTTCAGTGATGATGATATCCCTGAGGATATTGAAGCTGGAATTCATAAGCCAAAGTTTCAAACAGAACCTACTCTGCCAATCTATCTAAAGTTCACAGATGTGACATACAAGGTAGTGATTAAAGGCATGACAAAATGTAATGAAAAAGATATCTTGAAAGGGATTACTGGTTGTATAAATCCAGGTGAAGTTTTAGCATTGATGGGTCCTTCAGGAAGTGGCAAAACATCTTTGTTAAATCTACTTGGACAAAGGTTACATCAACCAACAATTGGCGGATCTATTACTTATAATGATCAACCATATTCTAAGTTCCTAAAAAGCAGGATTGGATTTGTGACACAAGATGATGTTTTGTTTCCTCACCTAACTGTGAAAGAAACATTAACATATGCAGCTCGTTTAAGGTTGCCGAAAACATTAACCaaagaggaaaaggaaaaaagagcTTTAGATGTTATCTATGAGTTAGGCTTAGAGAGGTGCCAAGACACGATGATAGGAGGTTCCTTTGTTCGAGGAGTATCCGGTGGAGAGAGGAAGAGAGTCTGTATTGGCAATGAGATCATAATCAATCCTTCTCTTTTGTTTCTTGATGAACCAACATCTGGTTTGGATTCTACAACTGCCTTGAGGATAGTTCAAATGTTACATGACATAGCCGAGGCTGGTAAAACTATAGTGACAACAATCCATCAACCATCAAGTAGACTCTTTCACAAATTTGACAAGTTGATTCTTTTGGGAAAAGGGAACTTACTTTACTTTGGAAAAGCATCAGAAGCAATGGACTATTTCAAATTTATAGGGTGTAGTCCTCTCATTACCATGAACCCGGCAGAGTTTTTACTAGACCTTGCAAATGGAAACATGCTTGATATTTCTATACCATCAGAATTAGAGGATAAAGTTCATATGGGAAATGCAGAAACTGAAACTTCCAATGGGAAACCATCAGCTGCAGCTGTACAAGAGTATCTGGCGGAGGCATATGAAACTAAGGTAGCAGAAGCAGAGAAGAAAAAGCTAATGGTTCCAATTCCTCTTGATGAAGAAGTTAAAGCTAAGGTTTGTTCGCGTAAAAGACAATGGGGAGCAAGTTGGTTAGAGCAATACTCAATATTGTTTTCTAGAGGATTCAAAGAACGTCGACATGACTATTTTAGCTGGTTGAGAATCACACAAGTTCTTTCTACTGCAGTCATTTTAGGATTACTATGGTGGCAATCTGATGCTAATAACCCAAAGGGTCTTCAAGATCAGGCGGGATTGCTTTTCTTTATCGCGGTGTTTTGGGGATTTTTTCCCGTGTTCACAGCAATATTCACATTTCCTCAAGAAAGAGCAATGTTGAATAAGGAAAGAGCAACAGATATGTATAGACTAAGTGCATACTTTGTGGCTAGAACTACAAGTGACCTTCCATTAGATTTGGTGTTACCAGTGCTTTTCCTCCTTGTTGTTTATTTCATGGCTGGTTTGAGACTCAGTGCAGTGCCTTTTTTCCTTAGTATTCTAACAGTTTTTCTCTGCATTGTAGCAGCTCAGGGACTTGGACTTGCTATTGGTGCTTCACTGATGGACTTGAAAAGGGCAACAACTTTAGCATCAGTCACTGTCATGACTTTCATGTTGGCTGGTGGTTTCTTTGTACagAAAGTCCCCATATTCATATCATGGATTCGGTTTTATCGATCATCTTCATCAATGGATTCGGGATCTTGGAGTTCTTCTACCAAATCCCGATCCCCTTTCCCTGAACGCtttcttcaaagaaagaatTCTTCTCAGGATAACTTGGATAGGTTTATTCCAAATAGATCAGCGATGGATTTCGGTTATGCTCATTACATGTTGACGGAGGGtacaaaggaaaaagaaaaagaaaattcagcGTTGATGTCACCGTCTCGTACAGCTTACCAGAAACTACTCGCTGAAGCCGCTAACATGAATGGTAGAACCAGAATCTTGGCCTTCAAGAATAAGCCTCCGACACCAGTTGAACTCATTCCTAGAGGAATTCTTTCACCTCCTCCTCAATCCAAAACCTCTAAACCCAAACGATGCATTCCTCAGACTTCTGAGAGGACATTGGATGCACCTGATATATTAGATGACTTCTACTTGAATTTATTAGATTGGGGTAGCGGTAATGTCCTTAGTATCGCTCTTGAAAATACCGTTTATCTCTGGAATGCTTCGGATAGTTCCACTACGGAACTTGTCACTGTGGATGATGAACATGGTCCTGTTACAAGTGTTAGCTGGGCTCCAGATGGTCGCCATTTAGCCGTTGGTTTAAACAATTCCCTTGTCCAGCTTTGGGATACAACTGCTAATAAACAGCTAAGGATATTGAAGGGTGGACACAGAGCAAGAGTGGGTTCACTGGCTTGGAACAATCATATTCTGACAACAGGAGGAATGGATGGTAAAATAGTAAACAATGATGTTAGAGTGAGATCTCACATCATTGAAACTTACAGAGGTCACAGCCAGGAGGTTTGTGGGCTCAAGTGGTCACTGTCAGGACAACAATTGGCAAGCGGTGGAAACGATAATGTTGTTCACATATGGGATAGGTCTGTGGTTTCTTCAAATTCACCTACCCGTTGGCTTCACAGGTTTGAAGAACACACAGCTGCAGTGAAGGCACTGGCTTGGTGTCCTTTTCAGGGTAATCTATTGGCTTCTGGTGGAGGTGGAGGTGATCATTGCATTAAGCTGTGGAACACACACACGGGTGCGAGACTGAATTCTGTTGACACAGGATCTCAAGTATGTTCTCTGCTATGGAACAAGAACGAGCGTGAGCTTCTTAGCTCACATGGTTTCACTGAGAACCAGCTTACCCTTTGGAAGTATCCTTCAATGGTGAAGATGGCGGAGCTCAACGGTCATACCTCGAGGGTGCTGTATATGACGCAGAGTCCAGATGGGTGTACTGTTGCATCTGCAGCCGCGGATGAAACACTGAGATTTTGGAATGTCTTTGGAACTCCAGCAGCACCATGCAAACCAGCACCAAAGACATATAATGAGCCTTTTGCTAATTTCAATCGTATCCGTTGA 3528 0.4141 MKNTIRSQHVYGKYGCVRWALMKALAFYFFFGSHGKCGGMEDGNYTSGLWRTKSEQLESVMEDFKSPPGSSESTGAVDGGSGSLTRKSGKRTSPGGRNAHIRKARSAQTSLKIDLDEVNSGAALSRASSLGLSFSFTGFSVPLDEISNSKPFSDDDIPEDIEAGIHKPKFQTEPTLPIYLKFTDVTYKVVIKGMTKCNEKDILKGITGCINPGEVLALMGPSGSGKTSLLNLLGQRLHQPTIGGSITYNDQPYSKFLKSRIGFVTQDDVLFPHLTVKETLTYAARLRLPKTLTKEEKEKRALDVIYELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLHDIAEAGKTIVTTIHQPSSRLFHKFDKLILLGKGNLLYFGKASEAMDYFKFIGCSPLITMNPAEFLLDLANGNMLDISIPSELEDKVHMGNAETETSNGKPSAAAVQEYLAEAYETKVAEAEKKKLMVPIPLDEEVKAKVCSRKRQWGASWLEQYSILFSRGFKERRHDYFSWLRITQVLSTAVILGLLWWQSDANNPKGLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLNKERATDMYRLSAYFVARTTSDLPLDLVLPVLFLLVVYFMAGLRLSAVPFFLSILTVFLCIVAAQGLGLAIGASLMDLKRATTLASVTVMTFMLAGGFFVQKVPIFISWIRFYRSSSSMDSGSWSSSTKSRSPFPERFLQRKNSSQDNLDRFIPNRSAMDFGYAHYMLTEGTKEKEKENSALMSPSRTAYQKLLAEAANMNGRTRILAFKNKPPTPVELIPRGILSPPPQSKTSKPKRCIPQTSERTLDAPDILDDFYLNLLDWGSGNVLSIALENTVYLWNASDSSTTELVTVDDEHGPVTSVSWAPDGRHLAVGLNNSLVQLWDTTANKQLRILKGGHRARVGSLAWNNHILTTGGMDGKIVNNDVRVRSHIIETYRGHSQEVCGLKWSLSGQQLASGGNDNVVHIWDRSVVSSNSPTRWLHRFEEHTAAVKALAWCPFQGNLLASGGGGGDHCIKLWNTHTGARLNSVDTGSQVCSLLWNKNERELLSSHGFTENQLTLWKYPSMVKMAELNGHTSRVLYMTQSPDGCTVASAAADETLRFWNVFGTPAAPCKPAPKTYNEPFANFNRIR 1175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04126 1175 ProSiteProfiles Trp-Asp (WD) repeats profile. 1116 1149 IPR001680 GO:0005515
Tsu07g04126 1175 MobiDBLite consensus disorder prediction 719 752 - -
Tsu07g04126 1175 Pfam ABC transporter 203 354 IPR003439 GO:0005524
Tsu07g04126 1175 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 67 715 - -
Tsu07g04126 1175 Pfam ABC-2 type transporter 521 712 IPR013525 GO:0016020|GO:0140359
Tsu07g04126 1175 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 980 1012 - -
Tsu07g04126 1175 ProSitePatterns ABC transporters family signature. 326 340 IPR017871 GO:0005524
Tsu07g04126 1175 Pfam Anaphase-promoting complex subunit 4 WD40 domain 895 953 IPR024977 -
Tsu07g04126 1175 CDD ABCG_EPDR 177 408 - -
Tsu07g04126 1175 MobiDBLite consensus disorder prediction 60 105 - -
Tsu07g04126 1175 ProSitePatterns Trp-Asp (WD) repeats signature. 1135 1149 IPR019775 -
Tsu07g04126 1175 MobiDBLite consensus disorder prediction 829 843 - -
Tsu07g04126 1175 ProSiteProfiles Trp-Asp (WD) repeats profile. 896 937 IPR001680 GO:0005515
Tsu07g04126 1175 SMART WD40_4 889 928 IPR001680 GO:0005515
Tsu07g04126 1175 SMART WD40_4 1109 1148 IPR001680 GO:0005515
Tsu07g04126 1175 SMART WD40_4 1021 1063 IPR001680 GO:0005515
Tsu07g04126 1175 SMART WD40_4 931 969 IPR001680 GO:0005515
Tsu07g04126 1175 SMART WD40_4 973 1012 IPR001680 GO:0005515
Tsu07g04126 1175 PANTHER PIGMENT PERMEASE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 67 715 - -
Tsu07g04126 1175 ProSiteProfiles Trp-Asp (WD) repeats profile. 980 1012 IPR001680 GO:0005515
Tsu07g04126 1175 SUPERFAMILY WD40 repeat-like 853 1149 IPR036322 GO:0005515
Tsu07g04126 1175 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 419 IPR027417 -
Tsu07g04126 1175 SMART AAA_5 212 403 IPR003593 -
Tsu07g04126 1175 Pfam WD domain, G-beta repeat 978 1012 IPR001680 GO:0005515
Tsu07g04126 1175 Pfam WD domain, G-beta repeat 1113 1148 IPR001680 GO:0005515
Tsu07g04126 1175 Pfam WD domain, G-beta repeat 1025 1063 IPR001680 GO:0005515
Tsu07g04126 1175 MobiDBLite consensus disorder prediction 822 843 - -
Tsu07g04126 1175 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1116 1149 - -
Tsu07g04126 1175 MobiDBLite consensus disorder prediction 66 92 - -
Tsu07g04126 1175 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 896 928 - -
Tsu07g04126 1175 Gene3D - 179 420 IPR027417 -
Tsu07g04126 1175 Gene3D - 805 1151 IPR015943 GO:0005515
Tsu07g04126 1175 CDD WD40 878 1148 - -
Tsu07g04126 1175 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 180 426 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04126 Tsu-Chr7 47071079 47082291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04126 202 412 Calmodulin-binding Proteins AT2G36910 29.032 4.06e-14 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04126 K05681 - gmx:100798801 1069.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04126 07 47071079 47082291 Tsu07g04126 07 47071079 47082291 ECH
Tsu07g04126 07 47071079 47082291 Tsu01g02038 01 20929506 20935000 PCT