Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04121 ATGATTGTGCCTCTCATTCCTGACCCTTTCTTTATTTTCCTCAATACAGGCTCAAAAGATGGAAACATATGCCTTGAAGAGTTTTGCGATAATGATCCTTCAACTGTCACAGTTTGTCGGCACGAGTTTCACCTACAATGTGTTCTTGATtgGTGTCAAAGAAGCTCACAATGTCCTATGTGTTGGCAATCTATTATCTTGACCGATCCTACCGGTCAAGAATTGTTTAAGGCGGTAGAGCAAGAAAGGAATTTTTGGGTGAATCCATCAAGAAATGTCAATACTCACCCTACTCTTCGAGATTTTGGATCGCAACAGCCACGCATAGGCGCCAATGCTTATGATTTGGAAGAGAGAATACTTCAACATTTAGCTATTGTTGCATCAAATGAAAGAATACATCAACTTGGTCAAAGGGAAGGTCAACCAATACAACAGACACCACAACTTCAAACTGAAAGTTCTTCATCTAATGGATCTACTATTATGGAAACAAATGCCCACGAAACTCACTCTAGGGATAGAAGTGATGTGGCTAATTCGTGCCCAATAAACCAAAATAGAGCAAGGTCTTCAGGATTGTACTATCTTTCAGATACTTTGCGATCGAGACTTGGTGCAGTGTCGACAAGATATAAAGAGTCAATTTCAAAGGGTACAAGGTGTTGGAAGAATAAGTTGTTGCTTTCTCGAAGTTCTACCATAACAGAAGTTGGAACAGATGCGAGAATGAACACGGGAATTCCTAGAGCATCGCATTCAATGAAATTCATTGGAGCtaagaagaaaaatagagtTCCTGGTACTTCTTTGTCAAATGGTTTGAAGGAAGGTTCTATAGCAGAGGCAAGCAACCAAAATTGTGATGaagttaatgaaaaatattcttCATGTGACAACAATACTCCAACTGCTTCTTCAACAAGCTAG 930 0.3849 MIVPLIPDPFFIFLNTGSKDGNICLEEFCDNDPSTVTVCRHEFHLQCVLDWCQRSSQCPMCWQSIILTDPTGQELFKAVEQERNFWVNPSRNVNTHPTLRDFGSQQPRIGANAYDLEERILQHLAIVASNERIHQLGQREGQPIQQTPQLQTESSSSNGSTIMETNAHETHSRDRSDVANSCPINQNRARSSGLYYLSDTLRSRLGAVSTRYKESISKGTRCWKNKLLLSRSSTITEVGTDARMNTGIPRASHSMKFIGAKKKNRVPGTSLSNGLKEGSIAEASNQNCDEVNEKYSSCDNNTPTASSTS 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04121 309 MobiDBLite consensus disorder prediction 137 162 - -
Tsu07g04121 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 73 IPR013083 -
Tsu07g04121 309 Pfam Ring finger domain 23 61 IPR001841 -
Tsu07g04121 309 ProSiteProfiles Zinc finger RING-type profile. 23 61 IPR001841 -
Tsu07g04121 309 SUPERFAMILY RING/U-box 23 68 - -
Tsu07g04121 309 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 150 303 - -
Tsu07g04121 309 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 23 142 - -
Tsu07g04121 309 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 150 303 - -
Tsu07g04121 309 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 23 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04121 Tsu-Chr7 47047322 47050550 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04121 23 69 C3H Transcription Factor Family AT4G23450 46.809 2.23e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04121 K19043 - gmx:100800419 269.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04121 07 47047322 47050550 Tsu07g04121 07 47047322 47050550 ECH