Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04110 ATGGCTGCTACTGtttcatcttctatcttcaacAGAATCTACAACCTCTCATTCACCCACTCTTCCATTTCACTCACTACCACAAACTTTTATCAAAGACCCATTTCCCATAAACACTTCAACCTCATCCTCAACTCTCAAAGTTTCAATCTTTCCCCTCTCCCACTTCAATCTCTTCATCCCCCATTCGCCACCACAGATGAACTCCAAACTTCTCAAGACACCACAGTTTCACAACAAGAAGAACCACAACAAGAGGAAGAACGGAAAGTAGCAACCTCAGTTGATGCTGGAAGACTCTATGTTGGAAATTTGCCATTTACAACGACTTCTTCACAATTGGCTGAGATTTTTGCAGAAGCTGGCACTGTTGTGTCTGTTGagGTTGTGTATGATCGAGTTACAGCCAGGAGCAGAGGATTTGCATTTGTTACAATGGGAAGTGTTGAAGAAGCTAAAGTAGCAATTCAAATGTTTGATGGCTCTCAAATTGGTGGTAGGAGTGCTAAGGTAAATTTTCCAGAAGTGCCAAAAGGAGGTGAAAGGTTGGTAATggtgcaaaaaaatagaaacgaCTACAAAGGCTTTGTAGACAGCCCTCACAAGATCTATGCTGGAAACCTTGGCTGGGGACTGAACTCTCAGGATCTTCGAGATGCTTTTGCGGAACAGCCAGGCATATTGGGTGCCAAAGTCATCTATGAGAAGGACAGTGGAAGATCTCGAGGTTTTGGATTTGTCACTTTTGAAACTGCTGAGGATTTACAAGCTGCTTTGAACGCTATGAACGGCGTGGAGGTTCAAGGTCGGCCATTGCGATTGAATTCGGCATCAGATAGAACATCATCGTCTCCTCCCCCAATAATTGaggaaaatatgaaaaacaACGTTGATAGCTCGGAATTGGTTTCTAGTGCCAGCACGTGA 927 0.4142 MAATVSSSIFNRIYNLSFTHSSISLTTTNFYQRPISHKHFNLILNSQSFNLSPLPLQSLHPPFATTDELQTSQDTTVSQQEEPQQEEERKVATSVDAGRLYVGNLPFTTTSSQLAEIFAEAGTVVSVEVVYDRVTARSRGFAFVTMGSVEEAKVAIQMFDGSQIGGRSAKVNFPEVPKGGERLVMVQKNRNDYKGFVDSPHKIYAGNLGWGLNSQDLRDAFAEQPGILGAKVIYEKDSGRSRGFGFVTFETAEDLQAALNAMNGVEVQGRPLRLNSASDRTSSSPPPIIEENMKNNVDSSELVSSAST 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04110 308 MobiDBLite consensus disorder prediction 271 308 - -
Tsu07g04110 308 SUPERFAMILY RNA-binding domain, RBD 194 283 IPR035979 GO:0003676
Tsu07g04110 308 Gene3D - 63 181 IPR012677 -
Tsu07g04110 308 MobiDBLite consensus disorder prediction 274 308 - -
Tsu07g04110 308 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 100 168 IPR000504 GO:0003723
Tsu07g04110 308 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 203 273 IPR000504 GO:0003723
Tsu07g04110 308 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 98 176 IPR000504 GO:0003723
Tsu07g04110 308 PANTHER RNA-BINDING PROTEIN CP33, CHLOROPLASTIC 2 288 - -
Tsu07g04110 308 SMART rrm1_1 99 172 IPR000504 GO:0003723
Tsu07g04110 308 SMART rrm1_1 202 275 IPR000504 GO:0003723
Tsu07g04110 308 Gene3D - 182 285 IPR012677 -
Tsu07g04110 308 MobiDBLite consensus disorder prediction 68 91 - -
Tsu07g04110 308 SUPERFAMILY RNA-binding domain, RBD 96 174 IPR035979 GO:0003676
Tsu07g04110 308 CDD RRM_HP0827_like 99 175 - -
Tsu07g04110 308 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 279 IPR000504 GO:0003723
Tsu07g04110 308 PANTHER OS02G0815200 PROTEIN 2 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04110 Tsu-Chr7 46927563 46929922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04110 100 277 Eukaryotic Initiation Factors Gene Family AT3G16380 30.337 2.42e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04110 - - gmx:100814852 425.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04110 07 46927563 46929922 Tsu07g04110 07 46927563 46929922 ECH
Tsu07g04110 07 46927563 46929922 Tsu01g01519 01 14690456 14693359 PCT