Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04108 ATGAACGATTTACTCTCCGTCGAAAACAACCACAGCCACATCATCCAAATGGCAGAAAACTCCACCGCAACGCCGCAAACTCTCGAAAAATTCTTCGAAGAAGTAGAATCCGTGAAAAAGGAACTAAAGGAATTAGATCAACTTCACATAAACCTCCGAAACTCACACGAAAAGAGCAAAAAACTTCACAGTGCAAAAGCGGTGAAAGAGCTTCGTTCAAAAATGGATTCCGATGTTACTCTGTCTCTCAAGAAAGCGAAACTAATCAAATCTCGGTTGGAATCACTTGACCGGTCCAATGAAGCGAGTCGGTCTTTGCCTGATTGTGGACCCGGTTCATCTTCAGATCGAACCAGGTTAGGAGTGGTTAGTGGTTTGAGGAAGAATTTGAGAGATTCAATGGAGAGTTTTAATGGACTTAGGGAACAGATATCGTCGGAGTATAGAGAGACGGTGCAGCGGAGATACTTTACTGTCACCGGTGAGACGGCTGATGATAAAACTGTTGACCTCCTCATCTCTACTGGTGAGAGTGAAACATTTTTACAGAAAGCAATCCAAGAGCAAGGGAGAGCAACAGTGATGGAGACAATACAAGAAATTGAGGAGAGACATGGTGCTGTgaaagagatagagagaaaTCTAAATGAGCTACACCAAGTGTTTTTAGACATGGCAGTTTTGGTTGAAGCTCAAGGTGAAGAGTTGAATGACATCGAGAGCCAAATGACGCGAGCAAAATCATATATTAAGAGAGGGGTCGAACAATTACATGTTGCTAAGAGACATCAAAAGAATACTCGTAAATGGACATGTTTTGCCATTTTACTTCTCCTCATAATCGCTTTGGTTATAATTCTCcctattgttttgaaaaataattag 885 0.4011 MNDLLSVENNHSHIIQMAENSTATPQTLEKFFEEVESVKKELKELDQLHINLRNSHEKSKKLHSAKAVKELRSKMDSDVTLSLKKAKLIKSRLESLDRSNEASRSLPDCGPGSSSDRTRLGVVSGLRKNLRDSMESFNGLREQISSEYRETVQRRYFTVTGETADDKTVDLLISTGESETFLQKAIQEQGRATVMETIQEIEERHGAVKEIERNLNELHQVFLDMAVLVEAQGEELNDIESQMTRAKSYIKRGVEQLHVAKRHQKNTRKWTCFAILLLLIIALVIILPIVLKNN 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04108 294 Gene3D - 24 158 - -
Tsu07g04108 294 Gene3D - 187 291 - -
Tsu07g04108 294 Coils Coil 28 55 - -
Tsu07g04108 294 ProSitePatterns Syntaxin / epimorphin family signature. 204 243 IPR006012 GO:0005484|GO:0006886|GO:0016020
Tsu07g04108 294 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 198 260 IPR000727 -
Tsu07g04108 294 SUPERFAMILY t-snare proteins 27 253 IPR010989 GO:0016020|GO:0016192
Tsu07g04108 294 CDD SynN 28 185 IPR006011 GO:0016020
Tsu07g04108 294 CDD SNARE_syntaxin1-like 197 257 - -
Tsu07g04108 294 Pfam SNARE domain 236 286 IPR000727 -
Tsu07g04108 294 Pfam Syntaxin 30 233 IPR006011 GO:0016020
Tsu07g04108 294 SMART SynN_4 23 149 IPR006011 GO:0016020
Tsu07g04108 294 MobiDBLite consensus disorder prediction 102 118 - -
Tsu07g04108 294 PANTHER SYNTAXIN-121 9 288 - -
Tsu07g04108 294 SMART tSNARE_6 193 260 IPR000727 -
Tsu07g04108 294 PANTHER SYNTAXIN 9 288 IPR045242 -
Tsu07g04108 294 MobiDBLite consensus disorder prediction 97 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04108 Tsu-Chr7 46919331 46922034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04108 28 272 SNARE and Associated Proteins AT3G11820 71.429 7.95e-126 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04108 K08486 - gmx:100808718 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04108 07 46919331 46922034 Tsu01g02080 01 21374835 21376824 PCT