Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04105 ATGGATCATGATGAGATCGAGATCGACGTTCCTTCATTCTTTGTTTGTCCTATATCATTAGAAATCATGAAAGATCCAGTAACAGTTTCAACCGGTATAACTTACGATAGAGAAAGTATCGAAAAATGGTTGATTtctaagaaaaacaaaacatgtccTGTTACAAAACAAGAGTTATCAGATTACACTGATCTTACACCAAACCATACTCTTAGAAGATTGATTCAAGCATGGTGCACATTAAATGCTTCACAAGGAGTTGAAAGAATCCCAACACCAAAACCACCAACCAACAAAATCCAAATCACAAAACTCATCAAAGAAGCTTCTCATTCATCTCTCACCATTCAGATTAATTGTCTTAAAAGACTTAGATCCATTGCTTCTGGAAGTGAAACAAATAAACGTATCATGGAAGATGCTGGTGTTGTTGAGTTTTTAGCTTCTGTTGTGATAAACAATAGTTGTAACATTGATCCTGCATCATTAATGTCTGAGATTAATGTTAATCCTGTTGATGAAGCATTAAGTAtacttcatcatcttcatgttTCAGAGACTGGATTGAAGAATCTTCTGGCTTTTAGAAATGGCGAATTTATTGAGTCATTAACAAAAGTTATGCAGAAAGGTTTCTTTGAATCAAGAGCTTATGCAGTTTTCTTGTTAAAATCTATGTCACAAGTAGCAGAAGCAGTGCAGTTACTACATCAAAAAACTGAACTGTTTGTTGAACTGGTTCAAGTTTTGAAagatcaaatttcttcaaaggTATCAAAAGCAGCACTTCAGACATTGATTGAACTCTGTCCATGGGGAAGAAACAGAATCAAAGGTGTTGAAGCAGGAACAGTTCCTGTTTTGATAGaacttttattagaaaattgcAAAGACAGAAAACCAAATGAAATGATGTTGGTTTTGTTGGAGAATCTTTGTCAATGTGCTGAAGGAAGAGCTGAACTTTTGAAACATGCAGCTGGTCTAGCTGTTGTTTCTAAGAAGATTCTAAGGGTTTCGACGCTCGCGAATGATAGAGCTGTGAGGATTCTGTTGTCTGTTTCAAAATTCTCTGCAACTCCTAATGTTGTTCAAGAGATGCTTAAACTTGGTGTTGTTGCTAAACTTTGTTTAGTTCTTCAAGTTGATTGTGGAAGTAAGACAAAAGAGAAAGCTAGGGAGATACTTAAGATGCATGCTAGGGCATGGAAGAATTCTCCATGCATACCTAGTAATTTAGTTTCTTCATACCCCAATTATGTATGA 1266 0.3365 MDHDEIEIDVPSFFVCPISLEIMKDPVTVSTGITYDRESIEKWLISKKNKTCPVTKQELSDYTDLTPNHTLRRLIQAWCTLNASQGVERIPTPKPPTNKIQITKLIKEASHSSLTIQINCLKRLRSIASGSETNKRIMEDAGVVEFLASVVINNSCNIDPASLMSEINVNPVDEALSILHHLHVSETGLKNLLAFRNGEFIESLTKVMQKGFFESRAYAVFLLKSMSQVAEAVQLLHQKTELFVELVQVLKDQISSKVSKAALQTLIELCPWGRNRIKGVEAGTVPVLIELLLENCKDRKPNEMMLVLLENLCQCAEGRAELLKHAAGLAVVSKKILRVSTLANDRAVRILLSVSKFSATPNVVQEMLKLGVVAKLCLVLQVDCGSKTKEKAREILKMHARAWKNSPCIPSNLVSSYPNYV 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04105 421 ProSiteProfiles U-box domain profile. 9 85 IPR003613 GO:0004842|GO:0016567
Tsu07g04105 421 PANTHER WDSAM1 PROTEIN 7 418 IPR045185 GO:0061630
Tsu07g04105 421 SUPERFAMILY RING/U-box 4 83 - -
Tsu07g04105 421 Gene3D - 96 407 IPR011989 -
Tsu07g04105 421 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 7 418 - -
Tsu07g04105 421 SMART Ubox_2 13 78 IPR003613 GO:0004842|GO:0016567
Tsu07g04105 421 SUPERFAMILY ARM repeat 102 397 IPR016024 -
Tsu07g04105 421 Pfam U-box domain 10 80 IPR003613 GO:0004842|GO:0016567
Tsu07g04105 421 CDD RING-Ubox_PUB 14 57 IPR045210 -
Tsu07g04105 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 89 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04105 Tsu-Chr7 46885800 46887532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04105 7 418 U-box Gene Family AT3G52450 57.968 3.79e-175 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04105 - - gmx:100811258 644.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04105 07 46885800 46887532 Tsu07g04105 07 46885800 46887532 ECH
Tsu07g04105 07 46885800 46887532 Tsu01g02098 01 21599828 21601461 PCT
Tsu01g02096 01 21570159 21571487 Tsu07g04105 07 46885800 46887532 PCT