Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04103 ATGGCAGCGTACTATCATGGTAATTCTGAAATCCAATCAAGTGGCGGCGGCGGTGGCGCCGACGGACTCCAAACACTTGTTCTAATGAATCCAAGCTATATGCAATATTCAGACAATTCACAACAACCACAAGCTCAACAGCAATCTCATGCCGCCGCTGCCGGTGGCGGTAACTTTGTTTTTCTCAACTCAACACCAACTGAAAACAACTCCTTCTCACCTCACGCGCCACCTTCCAACGCACAACAATTTGTCGGCATCCCTCTCGGCAACCAACACCAAATCCACCACGCGCACCACCATGACGTTGTACCTTCCTTGCATGGCTTCCTTCCTCACATGCAGTATAATCAGTGGAACACAATTGACCCCAATACAGCCGCGCGTGAAACACCACGCGCTCAACAAGGACTGTCTTTAAGCCTCTCTTCACAGCCAGCACGGTTTATGTCTTTTCGTGAGGGTGCTATGTCTGGTGGGTCACCGTCGACTCCGGCTTCCGGAGttactactaataataacaatgggAATTCAGGGATTCAGGTTTTGAGTTCAAAGTATTTGAGGGCAGCGCATGAGCTTTTAGAAGAGGTTGTGAATGTTAATGTTGGTGTTGAATTGGGAAATAAGAAGAGTGGTGGATTGAACAAGGTGATCGGAGAATCGTCGGGAGTTGGAAGTGGAGGAGATGGATCAATTGTTGGTGGTGGAGAAGGAAGTGGGAAGCGTAGCTCCGAGCTATCGACGGCGGAGAGACAAGAAATACAGATGAAGAAAGCTAAGCTAATTACCATGCTTGATGAgGTGGAACAAAGGTACAGACAATATCACCATCAAATGGAGGTTGTGGTCTCCTCATTTGAACAAGCCGCCGGCCTTGGTTCCGCGAGGACATACACTGCTCTTGCACTGCAAACAATTTCGAAACAATTTCGGTGTTTGAAAGATGCCATAACAGGACAAATTAAAGCTACAAATAAGAGCTTAGGAGAAGAAGATTGCTTTGGTGGTAAAATTGAAGGTTCAAGACTCAAATATGTTGATCATCAACTACGTCAACAACGTGCTCTACAACAGTTGGGAATGATCCAGCACAATGCTTGGAGACCCCAAAGAGGATTGCCTGAAAGATCTGTTTCTGTTCTTCGTGCTTGGCTCTTTGAACACTTCCTTCACCCTTATCCCAAGGATTCAGACAAGCACATGCTTGCAAAACAAACAGGGCTTACTAGGAGTCAGgtttcaaattggtttatAAATGCTCGAGTTAGGCTTTGGAAGCCAATGGTTGAAGAAATGTACTTAGAGGAAATGAAGGAGAATGAACTAAATGGATCAGAAGATAAATCAAGCAAAAGCAATGAAGATTCATCTATGAAAGTACCATCCCCTCAAGAGAAAGGTCTTAACTCTGAAACAGAACCTAAAGGTTACAATTCCACACAAGACATTTCTCAAAGCCAAGACACATCAATAATTTCTGTTTCTAGACCACAAACATCACAACATGTTGGAAATGTTAGAAACCAATCAGGATTCAGCTTCATTGGATCATCAGAACTAGAAGGTATACCACAAACAAGTCCTAAAAAACCAAGGAACCATGAACTTATCCATAATCCAAATAGTTTCATTGATGTTAAGCACAATGAAGCAAATAATGAGATAAAATTTGGTGATGAGAGACAGAGTAGAGATGGATACTCTTTTATGGGAAACCAAACAAATTTCATGGGCGGATTTGGACAATACCCAATTGGTGATATTGGTAGATTTGATCAAGAACAATTCACTCCAAGGTTTTCAAGTAATGGTGTTTCACTCACTCTTGGTCTTGACTCAATACAAGgaaatcatcaacatcaaacatTTATACCAAACCAAAACATTCAACTAGGAAGAAGCATTGACATAAGTGAACCAAATGAGTTTGGTTCCATAAACACTTCCTCTCCTCAATATGAAAGTATCAACATGCAAAATCCAAAAAGGTTTGCTGCACAATTGTTACCAGATTTTGTGGCCTAA 2028 0.4142 MAAYYHGNSEIQSSGGGGGADGLQTLVLMNPSYMQYSDNSQQPQAQQQSHAAAAGGGNFVFLNSTPTENNSFSPHAPPSNAQQFVGIPLGNQHQIHHAHHHDVVPSLHGFLPHMQYNQWNTIDPNTAARETPRAQQGLSLSLSSQPARFMSFREGAMSGGSPSTPASGVTTNNNNGNSGIQVLSSKYLRAAHELLEEVVNVNVGVELGNKKSGGLNKVIGESSGVGSGGDGSIVGGGEGSGKRSSELSTAERQEIQMKKAKLITMLDEVEQRYRQYHHQMEVVVSSFEQAAGLGSARTYTALALQTISKQFRCLKDAITGQIKATNKSLGEEDCFGGKIEGSRLKYVDHQLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKENELNGSEDKSSKSNEDSSMKVPSPQEKGLNSETEPKGYNSTQDISQSQDTSIISVSRPQTSQHVGNVRNQSGFSFIGSSELEGIPQTSPKKPRNHELIHNPNSFIDVKHNEANNEIKFGDERQSRDGYSFMGNQTNFMGGFGQYPIGDIGRFDQEQFTPRFSSNGVSLTLGLDSIQGNHQHQTFIPNQNIQLGRSIDISEPNEFGSINTSSPQYESINMQNPKRFAAQLLPDFVA 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04103 675 SMART HOX_1 368 432 IPR001356 GO:0003677
Tsu07g04103 675 Gene3D - 371 449 - -
Tsu07g04103 675 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 6 622 - -
Tsu07g04103 675 Pfam Homeobox KN domain 385 424 IPR008422 GO:0003677|GO:0006355
Tsu07g04103 675 MobiDBLite consensus disorder prediction 226 247 - -
Tsu07g04103 675 MobiDBLite consensus disorder prediction 456 511 - -
Tsu07g04103 675 Coils Coil 252 272 - -
Tsu07g04103 675 MobiDBLite consensus disorder prediction 439 511 - -
Tsu07g04103 675 ProSiteProfiles 'Homeobox' domain profile. 365 428 IPR001356 GO:0003677
Tsu07g04103 675 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 6 622 - -
Tsu07g04103 675 MobiDBLite consensus disorder prediction 439 455 - -
Tsu07g04103 675 SMART prehox3 177 320 IPR006563 -
Tsu07g04103 675 MobiDBLite consensus disorder prediction 60 83 - -
Tsu07g04103 675 MobiDBLite consensus disorder prediction 57 83 - -
Tsu07g04103 675 CDD homeodomain 368 429 IPR001356 GO:0003677
Tsu07g04103 675 Pfam Associated with HOX 182 319 IPR006563 -
Tsu07g04103 675 SUPERFAMILY Homeodomain-like 369 435 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04103 Tsu-Chr7 46864286 46871294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04103 1 675 Homeobox Transcription Factor Family AT2G35940 48.859 1.14e-166 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Tsu07g04103 POX 1.3e-46 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04103 07 46864286 46871294 Tsu07g04103 07 46864286 46871294 ECH
Tsu07g04103 07 46864286 46871294 Tsu01g02106 01 21669228 21672441 PCT