Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04055 atgtCATTACCAGAAACGGCGTCGTTATGGTGGAATAGcactcaacaacaacaacagagaaatcaacaacaagaagaagaaggtgaaaTAGAAGACGACGTCGTTTTAGACTcaataacaaaaccaaaaacaacacaagaagaagaaaaagaagcaaTGTTTGAGAAACCATTAACACCAAGTGACGTAGGAAAACTAAACCGACTCGTTATACCAAAACAACATGCTGAAAGATATTTTCCACTCGACTCAGAAGAAGTAAAAGGTTTATTACTGAGTTTTGAAGACGAGTCAGGTAAGTGTTGGAGATTTCGTTATTCTTATTGGAATAGTAGTCAGAGTTATGTTCTAACTAAAGGTTGGAGTCGTTATGTTAAAGATAAACGTCTTGATGCTGGTgatgttgttttgtttcaaCGACACCGTATTCATCCGCAACGGTTGTTTATTTCGTGGAGGCGCCGCCATGGTAGTAGTAATTCTACACCACCGGCTTATGTTAGTACTAGTACTCACGGCAATGGGATTGTTTCTGTTGGGTGGGCCAGTGGACTCTATCCTGCGCCTAATCCTTATCCTacgcatcatcatcatcatcatccctTGCCTAATTACCATGCAGGTGGAGGGTCCGAAAGTCAGAACATAAGCACACCTTGTGGAAACAATTCGAGTTCTAGTACATCCAGGGTGCTAAGGCTGTTTGGAGTGAACATGGAATGCCAACctgataataatattaatattaatattaatgattCTCAAACTAATTTCACACCAGATAATCAATgctcttataataataataataatatttcatcATCAACACAAACACAAGGCACAGCTATTCCACAATTCTACCACCATCTCCACCGTCAACCTCCTTCAAACACTCACCATCACATGCTACGTCAACAACCATATTAA 927 0.3312 MSLPETASLWWNSTQQQQQRNQQQEEEGEIEDDVVLDSITKPKTTQEEEKEAMFEKPLTPSDVGKLNRLVIPKQHAERYFPLDSEEVKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFQRHRIHPQRLFISWRRRHGSSNSTPPAYVSTSTHGNGIVSVGWASGLYPAPNPYPTHHHHHHPLPNYHAGGGSESQNISTPCGNNSSSSTSRVLRLFGVNMECQPDNNINININDSQTNFTPDNQCSYNNNNNISSSTQTQGTAIPQFYHHLHRQPPSNTHHHMLRQQPY 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04055 308 SMART B3_2 54 156 IPR003340 GO:0003677
Tsu07g04055 308 CDD B3_DNA 53 142 IPR003340 GO:0003677
Tsu07g04055 308 ProSiteProfiles B3 DNA-binding domain profile. 54 156 IPR003340 GO:0003677
Tsu07g04055 308 Gene3D - 42 165 IPR015300 -
Tsu07g04055 308 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 15 246 - -
Tsu07g04055 308 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 15 246 IPR044800 GO:0003700
Tsu07g04055 308 SUPERFAMILY DNA-binding pseudobarrel domain 51 156 IPR015300 -
Tsu07g04055 308 MobiDBLite consensus disorder prediction 1 54 - -
Tsu07g04055 308 Pfam B3 DNA binding domain 54 155 IPR003340 GO:0003677
Tsu07g04055 308 MobiDBLite consensus disorder prediction 1 23 - -
Tsu07g04055 308 MobiDBLite consensus disorder prediction 34 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04055 Tsu-Chr7 46522246 46524261 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04055 47 246 RAV Transcription Factor Family AT5G06250 55.660 2.65e-70 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu07g04055 B3 3.7e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04055 - - cam:101494766 367.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04055 07 46522246 46524261 Tsu07g04055 07 46522246 46524261 ECH
Tsu07g04055 07 46522246 46524261 Tsu01g02162 01 22594076 22596836 PCT