Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04051 ATGGCCTCCATCACAAGAATAGTCGGTTACAATACTTCTGTTTCTCCCTATCTTCGCACTTTCCGCAGAGCAATTGCTTTCAAGCTTTTCGTTGGAGGACTCTCCTTTCACACTACAGAGAAATCATTGTCAGATGCATTCTCAGATTATGGACAAGTTGTTGAAGCTAAAGTTATAACGGATAGGGTGTCAGAGAAATCTAAAGGGTATGGTTTTGTTACTTTTGCTTCACAAGATGAAGCTGAATGTGCCATAACAGAGATGAATGAAAAGGCATTAAATGGACGTGTTATCTTCGTTGATTATGCAAAACCAGATACTAAACGCAGTATGGGAATGCCAATTGCTAGAGGACCTCCAGAAGATCTGAACAAACAACAGACAGTAGATTCTCCTCAAGCCACAGTTGCCGGAGGACCACCTGAAGATCTGAACAAACAACAGACAGTAGATTCTCCTCAAGACAAATGA 471 0.4119 MASITRIVGYNTSVSPYLRTFRRAIAFKLFVGGLSFHTTEKSLSDAFSDYGQVVEAKVITDRVSEKSKGYGFVTFASQDEAECAITEMNEKALNGRVIFVDYAKPDTKRSMGMPIARGPPEDLNKQQTVDSPQATVAGGPPEDLNKQQTVDSPQDK 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04051 156 Gene3D - 22 133 IPR012677 -
Tsu07g04051 156 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL-LIKE 16 122 - -
Tsu07g04051 156 SMART rrm1_1 28 101 IPR000504 GO:0003723
Tsu07g04051 156 PANTHER TRANSFORMER-2-RELATED 16 122 - -
Tsu07g04051 156 MobiDBLite consensus disorder prediction 108 156 - -
Tsu07g04051 156 SUPERFAMILY RNA-binding domain, RBD 27 118 IPR035979 GO:0003676
Tsu07g04051 156 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 29 98 IPR000504 GO:0003723
Tsu07g04051 156 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 105 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04051 Tsu-Chr7 46486603 46488472 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04051 29 119 Eukaryotic Initiation Factors Gene Family AT1G49760 35.922 9.73e-09 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04051 - - lja:Lj1g3v4721740.1 204.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04051 07 46486603 46488472 Tsu07g04051 07 46486603 46488472 ECH