Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04044 ATGGCGGCATTTCTGAGAAACAGAAACAATTCACACTTGTTTCTCCTAACTCGCTTTCTCAACTCACCGAGTCTCCTTCGTCCGAGATGGATTGAAACCATAGCATACGAAGAAACACGTTCTCACCCAGACAAACCTTACACTTCCACGGCCGTAATCATCCATGGATTTTTGGGATCCAACAGAAACTGGAGATCTTTCTCTCGCAATCTCTTGGCATCTCTCTCCAATTCCTCTCCATCTTCCAaTTGGAGGACAGTGGCGATGGACATGAGGAATCATGGGAAATCATCGGAGAGGAAACTGGATCCGCCGCATGATTTGATTAATACGGCAAAAGATTTGGCTAATTTGGTGAAGGCTGAAGGTTGGTCTTGGCCTGAGGTTGTTATTGGACACTCCATGGGTGGAAAGGTGGCTTTACAGTTTGCTCATAGTTGTAGAAATGGTGAATATGGTGATTCTGCAAAATGGCCAAAACAGCTTTGGGTATTGGATTCTGTCCCGGGAGAAGTGAGCATCGGAAACAGAAGTGATGAAGTCCGGGATGTTTTAATGACTTTGGAAAGTTTACCGTCAGAAATCCCATCTCGAAAGTGGCTTGTGAGTCATCTGATGGGACTTGGTTACTCTAAGACATTGGCAGATTGGATAGGCACCAACCTGAAGAAAGTTGGTGATCACGAGACATGGATATTTGATCTTCAAAGCGCCAAGGAGATGTTTCATTCTTACTGGGAAAAGTCCTATTGGGATCTATTGGAGAACCCTCCAAAAGGTATGGAAATAGTAATTGTCCGTGCTGAAAAGAGTGATAGATGGGACGAAGAGGCTATTGAGCGGATCCAGAAACTAGCTAGTCAAGGAGGAACTGATTCTGTTGGAAAGAAGCCCCTAACCGGGAAAACCATTACCCTCGAGGTAGAGAGCAGCGACACAATCGACAATGTCAAAGCTAAGATTCAAGACAACGAAGGAATTCCCCCGGATCAGCAGCGATTGATTTTCGCCGGTAAACAACTTGAAGATGGACGCACTTTGGCTGATTACAATATCCAGAAGGAATCAACTCTTCATCTTGTTCTCAGGCTTCGTGGTGGAATCATTGAACCTTCTTTGATGGCTTTGGCTCGCAAATACAACCAAGACAAAACCATTTGCCGCAAaTGCTATGCTCGTCTTCATCCTAGGGCTATGAACTGCCGCAAGAAGAAATGTGGACACAGCAATCAATTGAGGCCAAAGAAGAAGATCAAGTAA 1260 0.4476 MAAFLRNRNNSHLFLLTRFLNSPSLLRPRWIETIAYEETRSHPDKPYTSTAVIIHGFLGSNRNWRSFSRNLLASLSNSSPSSNWRTVAMDMRNHGKSSERKLDPPHDLINTAKDLANLVKAEGWSWPEVVIGHSMGGKVALQFAHSCRNGEYGDSAKWPKQLWVLDSVPGEVSIGNRSDEVRDVLMTLESLPSEIPSRKWLVSHLMGLGYSKTLADWIGTNLKKVGDHETWIFDLQSAKEMFHSYWEKSYWDLLENPPKGMEIVIVRAEKSDRWDEEAIERIQKLASQGGTDSVGKKPLTGKTITLEVESSDTIDNVKAKIQDNEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKTICRKCYARLHPRAMNCRKKKCGHSNQLRPKKKIK 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04044 419 Pfam Ribosomal L40e family 369 418 IPR001975 GO:0003735|GO:0005840|GO:0006412
Tsu07g04044 419 SMART ubq_7 292 363 IPR000626 GO:0005515
Tsu07g04044 419 PANTHER 2-SUCCINYL-6-HYDROXY-2,4-CYCLOHEXADIENE-1-CARBOXYLATE SYNTHASE 1 296 - -
Tsu07g04044 419 Pfam Ubiquitin family 299 365 IPR000626 GO:0005515
Tsu07g04044 419 SUPERFAMILY Ubiquitin-like 297 367 IPR029071 -
Tsu07g04044 419 PANTHER PROLYL AMINOPEPTIDASE-RELATED 1 296 - -
Tsu07g04044 419 SUPERFAMILY alpha/beta-Hydrolases 33 277 IPR029058 -
Tsu07g04044 419 Gene3D - 370 419 IPR038587 -
Tsu07g04044 419 ProSiteProfiles Ubiquitin domain profile. 297 367 IPR000626 GO:0005515
Tsu07g04044 419 SMART Ribosomal_L40e_3 368 419 IPR001975 GO:0003735|GO:0005840|GO:0006412
Tsu07g04044 419 CDD Ubl_ubiquitin 297 367 - -
Tsu07g04044 419 Gene3D - 293 369 - -
Tsu07g04044 419 ProSitePatterns Ubiquitin domain signature. 318 343 IPR019954 -
Tsu07g04044 419 Gene3D alpha/beta hydrolase 29 291 IPR029058 -
Tsu07g04044 419 PRINTS Ubiquitin signature 323 343 IPR019956 -
Tsu07g04044 419 PRINTS Ubiquitin signature 344 365 IPR019956 -
Tsu07g04044 419 PRINTS Ubiquitin signature 302 322 IPR019956 -
Tsu07g04044 419 Pfam Alpha/beta hydrolase family 52 284 IPR000073 -
Tsu07g04044 419 SUPERFAMILY Zn-binding ribosomal proteins 367 418 IPR011332 GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04044 Tsu-Chr7 46439890 46447797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04044 297 419 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 95.935 5.52e-82 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04044 - - mtr:MTR_7g105100 517.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04044 07 46439890 46447797 Tsu07g04044 07 46439890 46447797 ECH