Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04033 ATGCAATTGAATCAATCAGATATGGATACATTAAGCCCTGCAGTCTTTGTCAATGCGGAACTGTTACCCTTTTATGTTGGAAGAAGAGTTCGTACTGTCATGCAGGTTTTGCGATCTGATGGTATAGCTGTCATTGGAAAATCACCAGATGAGAAGCAGTTGATTGTAAAAGGATCACCCCCGCCTGCTCCTCTTACAAGTTTTGTAGAAGTTATTGGTATTGTTAACAGTGACAAGTCCATCAAAGCTGAGTTATGGACCAATTTTGGTGATGCAATTGATATGTTCAGCTACAATAAGCTTTGTCAGCTTGCAAATGGAGATTTTAAACAGTTGTTCCTGTGA 345 0.3942 MQLNQSDMDTLSPAVFVNAELLPFYVGRRVRTVMQVLRSDGIAVIGKSPDEKQLIVKGSPPPAPLTSFVEVIGIVNSDKSIKAELWTNFGDAIDMFSYNKLCQLANGDFKQLFL 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04033 114 CDD RPA3 13 113 - -
Tsu07g04033 114 Pfam Replication factor A protein 3 13 112 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu07g04033 114 Gene3D - 8 114 IPR012340 -
Tsu07g04033 114 SUPERFAMILY Nucleic acid-binding proteins 12 113 IPR012340 -
Tsu07g04033 114 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 5 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04033 Tsu-Chr7 46352561 46354293 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04033 8 114 Core DNA Replication Machinery Family AT4G18590 59.813 3.88e-46 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04033 K10740 - gmx:100306641 169.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04033 07 46352561 46354293 Tsu07g04033 07 46352561 46354293 ECH
Tsu07g04033 07 46352561 46354293 Tsu01g02866 01 34486794 34499837 PCT