Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04032 ATGCATAAAATGCCCGGGACAAGACAGACAGATGCAGCAGCCCAAAATTCAGAGTCACCGGGGGGGAACAGTGAACCTGAAAAACCCACAAATTCTGGTGAGCAGGTAGATCTTAATGGGGACAATGATCAAGAGGAGACCTCAGAGGAAGAGGTTGAGTATGAAGAGATAGAGGTGGAGGAAGAAgtagaagaggaagaagaagaggaggaagaagagGAAGACGAAGTAGAGGAAGAGAATAAGCCCTCAGATGGTGAAGATGAGgttgagaaaaagaaacatgctGAGCTTCTTGCACTTCCACCTCATGGTTCAGAGGTCTACATTGGGGGAATTCCTCGTGAAGTTTCTGAAAAAGATTTAAAGGTGTTTTGTCAATCTGTGGGAGAAGTGGCACAGGTCAGGATTATGAAGGGGAAAGAAGCAAATGGTTATGCTTTTGTGACCTTCAAGACAAAGGAATTGGCCTCTAAAGCTATGGAGGAGCTGAACAATACTGAATTTAAGGGGAAAAAAATAAAGTGCTCACCATCTCAAGTTAAGCATAGGTTATTCATTGGTAATGTTCCTAAAGATTGGACTGTAGAAGATATGAAGAAGGTTGTTGCTAAAGTTGGCCCTGGTGTCATTTCTGTGGAACTGTTGAAGGATCCACAGAGTTCTGTCCGTAATCGTGGATTTGCTTTTATTGAGTATCACAATCATGCTTGTGCAGAATATTCAAGGCAGAAAATGTCAAACTCACAATTTAAACTTGACAATAATGCTCCAACAGTGAGCTGGGCTGACCCAAGGAATTCTGAATCATCAGCATCCTCTCAGGTGAAAGCAGTATATGTAAAGAACCTTCCAGAAGACATAACTCAAAATCGTCTGCGGGAGCTGTTTGAACATCATGGAAAAATCACAAAAGTGGCTCTCCCTCCTGCTAAAGCTGGACAAGAAAAGAGTAGATATGGTTTTGTGCACTTTGCTGATAGATCAAGTGCAATGAAGGCATTGAAGAATACTGAGAAGTATGAAATTGACGGCCAAACATTGGAATGCTCACTCGCTAAGCCACAGGCAGATCAGAAGTCATCTGGGACTTCAAATTCGCACCAGTCAGCTGTACTTCCTTATCCATCTCCTCTTGGATATGGTGCTCTTGGTGCAGGATATGGTGCACTTGGTGCAGGATATGGTGCTGCTGGCTTTGCTCCGCCACTGATGTATGGTCCGGGAGCAACTCCTGCTGGCATGGCAATGATGCCAATGCTTTTACCGGATGGAAGAATTGCATATGTTTTGCAACAACCAGGTTTGCAGCAGCCAGGTTTACAGCAGTCAGGTTTGCAACAGCCGGGTTTTCAACAGCATGCTCCATCACCAGTATCCAGACATGGTAGGAATAGTGGTGGTAGCTCAAGTGGTGAAAAGCGCAGTAACGATAATAACCGTAATCGTGGTCATGGCCGATATAATCCCTACTAA 1476 0.4268 MHKMPGTRQTDAAAQNSESPGGNSEPEKPTNSGEQVDLNGDNDQEETSEEEVEYEEIEVEEEVEEEEEEEEEEEDEVEEENKPSDGEDEVEKKKHAELLALPPHGSEVYIGGIPREVSEKDLKVFCQSVGEVAQVRIMKGKEANGYAFVTFKTKELASKAMEELNNTEFKGKKIKCSPSQVKHRLFIGNVPKDWTVEDMKKVVAKVGPGVISVELLKDPQSSVRNRGFAFIEYHNHACAEYSRQKMSNSQFKLDNNAPTVSWADPRNSESSASSQVKAVYVKNLPEDITQNRLRELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYEIDGQTLECSLAKPQADQKSSGTSNSHQSAVLPYPSPLGYGALGAGYGALGAGYGAAGFAPPLMYGPGATPAGMAMMPMLLPDGRIAYVLQQPGLQQPGLQQSGLQQPGFQQHAPSPVSRHGRNSGGSSSGEKRSNDNNRNRGHGRYNPY 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04032 491 MobiDBLite consensus disorder prediction 438 491 - -
Tsu07g04032 491 MobiDBLite consensus disorder prediction 9 38 - -
Tsu07g04032 491 Gene3D - 266 390 IPR012677 -
Tsu07g04032 491 Gene3D - 184 264 IPR012677 -
Tsu07g04032 491 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 277 355 IPR000504 GO:0003723
Tsu07g04032 491 PANTHER - 16 489 - -
Tsu07g04032 491 MobiDBLite consensus disorder prediction 1 92 - -
Tsu07g04032 491 CDD RRM_SF 108 177 - -
Tsu07g04032 491 SMART rrm1_1 278 351 IPR000504 GO:0003723
Tsu07g04032 491 SMART rrm1_1 107 177 IPR000504 GO:0003723
Tsu07g04032 491 SMART rrm1_1 184 261 IPR000504 GO:0003723
Tsu07g04032 491 SUPERFAMILY RNA-binding domain, RBD 102 182 IPR035979 GO:0003676
Tsu07g04032 491 SUPERFAMILY RNA-binding domain, RBD 183 357 IPR035979 GO:0003676
Tsu07g04032 491 SMART rrm2_1 107 177 IPR003954 GO:0003676
Tsu07g04032 491 MobiDBLite consensus disorder prediction 438 475 - -
Tsu07g04032 491 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 175 IPR000504 GO:0003723
Tsu07g04032 491 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 279 348 IPR000504 GO:0003723
Tsu07g04032 491 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 252 IPR000504 GO:0003723
Tsu07g04032 491 MobiDBLite consensus disorder prediction 39 85 - -
Tsu07g04032 491 Coils Coil 49 83 - -
Tsu07g04032 491 Gene3D - 33 183 IPR012677 -
Tsu07g04032 491 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 181 IPR000504 GO:0003723
Tsu07g04032 491 PANTHER GEO13361P1-RELATED 16 489 - -
Tsu07g04032 491 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 265 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04032 Tsu-Chr7 46343964 46349266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04032 108 421 Eukaryotic Initiation Factors Gene Family AT4G34110 22.992 3.92e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04032 K13161 - gmx:100798476 607.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04032 07 46343964 46349266 Tsu07g04032 07 46343964 46349266 ECH