Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04018 ATGGAAAGGTCATTAGAGTTGAAAGAAGTTCAGAAACTCGAAGGTCACACTGACAGGGTTTGGAGCTTGGATTGGAACCCTGCCACCGGCCACGACGGTATTCCTCTCGTTTTCGCTTCTTGCAGCGGCGACAAAACCGTTCGAATCTGGGAACAAAATCTCTCCACTAATCTCTTCTCCTGCAAGGCGACTTTGGAAGAAACGCACACTCGAACTGTTCGCTCTTGTGCTTGGTCTCCGTCCGGGAAATTGTTAGCCACTGCAAGTTTTGATGCCACCACTGCTATATGGGAAAATGTTGGGGGTGATTTTGAGTGTGTCTCTACTTTGGAGGGACATGAAAATGAAGTAAAGAGTGTATCTTGGAATGCAGCTGGAACTTTGCTTGCAACTTGTAGTAGGGACAAGTCTGTTTGGATATGGGAAGTGCAGCCAGGTAATGAGTTTGAGTGTGTGTCAGTGCTGCAAGGACATACTCAGGATGTGAAAATGGTGAGGTGGCACCCAACGGAGGATATCTTATTTTCATGTAGCTATGATAATAATATTAAGGTTTGGGCAGATGAAGGTGACAGTGATGACTGGCAGTGTGTTCAAACCCTTGGAGAACCCAACAACGGTCATACATCTACTGTTTGGGCCCTCTCCTTCAATGCTAGTGGAGACAAAATGGTTACCTGTAGTGATGATCTTACCCTAAAGGTATGGGGAACAGAGAGCATAGGTATGCAATCTGGTGGTGGATTTGCTCCTTGGAGACATCTTTGCACTCTTACAGGGTATCATGAGCGGACAATTTTCTCAGTTCATTGGTCAAGGGGAGGTATCTTTGCCAGTGGAGCTGCTGATGACGCTATTCGGCTTTTTGTGGATGATAACAGTGAAAGTCAGGTTGATGGTCCTCTGTACAAGTTGCTATTGAAGAAGGATAAAGCTCATGACATGGATATAAATTCTGTGCAGTGGAGCCCTGGGGAGAAGCCACTGCTAGCCTCTGCAAGCGATGATGGGACAATCAAGGTTTGGGATCTGGTATCATAG 1041 0.4621 MERSLELKEVQKLEGHTDRVWSLDWNPATGHDGIPLVFASCSGDKTVRIWEQNLSTNLFSCKATLEETHTRTVRSCAWSPSGKLLATASFDATTAIWENVGGDFECVSTLEGHENEVKSVSWNAAGTLLATCSRDKSVWIWEVQPGNEFECVSVLQGHTQDVKMVRWHPTEDILFSCSYDNNIKVWADEGDSDDWQCVQTLGEPNNGHTSTVWALSFNASGDKMVTCSDDLTLKVWGTESIGMQSGGGFAPWRHLCTLTGYHERTIFSVHWSRGGIFASGAADDAIRLFVDDNSESQVDGPLYKLLLKKDKAHDMDINSVQWSPGEKPLLASASDDGTIKVWDLVS 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04018 346 PRINTS G protein beta WD-40 repeat signature 38 52 IPR020472 -
Tsu07g04018 346 PRINTS G protein beta WD-40 repeat signature 330 344 IPR020472 -
Tsu07g04018 346 PRINTS G protein beta WD-40 repeat signature 129 143 IPR020472 -
Tsu07g04018 346 ProSitePatterns Trp-Asp (WD) repeats signature. 330 344 IPR019775 -
Tsu07g04018 346 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 155 186 - -
Tsu07g04018 346 ProSiteProfiles Trp-Asp (WD) repeats profile. 205 236 IPR001680 GO:0005515
Tsu07g04018 346 ProSiteProfiles Trp-Asp (WD) repeats profile. 66 98 IPR001680 GO:0005515
Tsu07g04018 346 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 13 51 - -
Tsu07g04018 346 SMART WD40_4 6 51 IPR001680 GO:0005515
Tsu07g04018 346 SMART WD40_4 103 142 IPR001680 GO:0005515
Tsu07g04018 346 SMART WD40_4 251 290 IPR001680 GO:0005515
Tsu07g04018 346 SMART WD40_4 194 237 IPR001680 GO:0005515
Tsu07g04018 346 SMART WD40_4 58 98 IPR001680 GO:0005515
Tsu07g04018 346 SMART WD40_4 148 187 IPR001680 GO:0005515
Tsu07g04018 346 SMART WD40_4 303 343 IPR001680 GO:0005515
Tsu07g04018 346 CDD WD40 9 343 - -
Tsu07g04018 346 Hamap Probable cytosolic iron-sulfur protein assembly protein CIAO1 [CIAO1]. 5 346 IPR028608 GO:0016226|GO:0097361
Tsu07g04018 346 PANTHER CYTOSOLIC IRON-SULFUR PROTEIN ASSEMBLY PROTEIN CIAO1 HOMOLOG-RELATED 3 346 - -
Tsu07g04018 346 ProSiteProfiles Trp-Asp (WD) repeats profile. 110 151 IPR001680 GO:0005515
Tsu07g04018 346 ProSiteProfiles Trp-Asp (WD) repeats profile. 13 51 IPR001680 GO:0005515
Tsu07g04018 346 ProSiteProfiles Trp-Asp (WD) repeats profile. 155 186 IPR001680 GO:0005515
Tsu07g04018 346 Gene3D - 36 346 IPR015943 GO:0005515
Tsu07g04018 346 PANTHER WD40 PROTEIN CIAO1 3 346 IPR028608 GO:0016226|GO:0097361
Tsu07g04018 346 ProSitePatterns Trp-Asp (WD) repeats signature. 129 143 IPR019775 -
Tsu07g04018 346 ProSiteProfiles Trp-Asp (WD) repeats profile. 310 346 IPR001680 GO:0005515
Tsu07g04018 346 Pfam WD domain, G-beta repeat 61 97 IPR001680 GO:0005515
Tsu07g04018 346 Pfam WD domain, G-beta repeat 105 141 IPR001680 GO:0005515
Tsu07g04018 346 Pfam WD domain, G-beta repeat 9 50 IPR001680 GO:0005515
Tsu07g04018 346 Pfam WD domain, G-beta repeat 311 343 IPR001680 GO:0005515
Tsu07g04018 346 Pfam WD domain, G-beta repeat 195 236 IPR001680 GO:0005515
Tsu07g04018 346 Pfam WD domain, G-beta repeat 150 186 IPR001680 GO:0005515
Tsu07g04018 346 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 110 144 - -
Tsu07g04018 346 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 66 98 - -
Tsu07g04018 346 SUPERFAMILY WD40 repeat-like 5 343 IPR036322 GO:0005515
Tsu07g04018 346 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 310 346 - -
Tsu07g04018 346 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 205 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04018 Tsu-Chr7 46254496 46260592 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04018 81 346 U-box Gene Family AT2G33340 27.341 2.92e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04018 K24730 - gmx:100778826 659.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04018 07 46254496 46260592 Tsu07g04018 07 46254496 46260592 ECH