Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04001 aTGGGTTCATTTTCTGGCACTTGTGAAATAGTTGAAGCAAGAGAGGATTTAAGTCGAGGGAAAGGTGTTGTAGGGATTTGCCAGTCCAATTCTCGGTGCAAAACGTCTGAGAAAAATAAGAAGCCTTTGGTGTTGAACCTGGGATACAAGGATTatattgatgatgatattaaCAAGCTGTTTGAATCATTTGCTCTTAAATCTTCATCAAGGGATTTGGGCATTTCACAAGATGGTACGAGTCATAAGCTGAAAAACACCTTAAAAAAGCCAATGACAATGGGTGTTCCTCGGTCACCACGAGTTGGAACTTCTGAGGCTGCTAATTTGAAGCAGGCTTTGAGAGACCTTTGTATATCTAAGGCATCAGAAGTGGCTGCTATGAAACGGTTGTCAAAGTCAACAGCTTCTCCAAGAATATCTGAGGTTGGGAGGATACAGACATTGTACAGTTCAGTTGTAGATGAAACTGGTCATTTCGGGCCTTATGCTGCTGAGAGTAAAGGGCACAGAAAAGAAATCTCTCTAGTGCCAGAAAAAGGCAAGTCACCCTTCTTGGATAAAACATCTCAATCTCATCAAACTACCCAAATCACATCATCGAGCCAAGCCATCAATTCTGCTTGGGAAATCGCTGTTGCAACTACTCAACTTGATTCCGGGACTTCATCGATGCAAAGTGATTCAGCAGGTTCATCGAGTAAAATTGGGTTTCAATCACAGCGTGTGATACCTGTTCAACCAGAAAAACAAACATCTGCATCTTATCAATCTCTTTATAATGCATCTGAAAGTAAATTAGAGTTGCCTGTACACGCTTCTTCCCCTAAAAAGTTAGGAAATAAAATAGTTGCGTCAAATACTGGGCGCAAAGGTAGGTTGCAGACAGCATCTTCTTCATCTACTTCTGTAAGTGGCACCAGAGTTAACAAACAGCCACACCATGCCCCTCACACAGTTAAAATGGTAATCAAGAACAAGAATCTGAGTAAGAAGAAAGTGAAGGAGGATACAGGTTCTGCATCATGTGATCCTACATCAAATGAAGTTAGTAAGTCTGTTCCTGGCACAGCTCGACTGATTTGTGAAAGATGTAGGTGTGCTTTAGAAAATACAggggaagaaaaaaacaaagaggTTATGATCGCAGACTCTACTAGTCCTGGAAATGAAGTGAACTCGAGCAATGTGCACTCTGGTTCAAATAAACCTGATTTGGCATCAACTAGCGGTAATATAAACAAAGGCTGCAAAGCAGTTGGAAAGGTGGTGAAGAACACCAAATTGAAAGAGCAACTTGAGTTTTCACAAAGCTCAAAGAGTAGTCAAGGTGAGTACAGTAGTAGTACTAGTACCAGTGATGAGAGCAACATGAGTGGCTCAAGTTTCGGCAGTAGGCCTCACATGTCAAAGGATGTTAGGTGGGAAGCCATTCGACATGCTCAACTGCAGCATGGAGCTTTGGGCTTGAGACATTTCAATCTTTTGAAGAAACTTGGTTGTGGTGACATTGGCACTGTTTATCTCGCTGAACTAATTGGCACAAGCTGTTTGTTTGCTATTAAGGTCATGGACATTGAATTTTTGGCAAGGCGGAAGAAGATACCTAGGGCTCAAACTGAAAGAGAAATATTAAGGATGCTGGACCATCCGTTTCTTCCTACATTGTATGTGCAATTTACATCAGATAATCTCTCATGTTTGGTCATGGAGTATTGTCCAGGTGGAGATCTTCATGTTCTACGGCAGAAGCAGCTCGATAGATGTTTTTCGGAGCTAGCAGCAAGGTTTTATGTTGCTGAAGTCCTCCTTGCTTTAGAGTACTTGCACATGCTTGGAGTTGTTTACCGTGATTTGAAACCTGAAAACATTCTTGTTCGAGAAGACGGCCACATTATGCTCACTGATTTTGATCTGTCGTTGAGGTGTGCTGTTAGCCCAACACTTTTGAAGTCATCTTATGATGTTGACTCTACAAAAATTTCTCGTCTTAGTGCACAATCAAGTTGTATTGAACCATTCTGCATTGAACCATCTTGTCAAGTTACATGCTTCAGCCCCAGATTCCTACCGGCTGCAGCAAAATCAAGGAAACTAAAAGTTGATCCTGTTGCCCAGGTCAGATCACTGCCACAGCTTGTGGCCGAGCCCACTGATGCAAGATCAAACTCATTTGTTGGTACACATGAATACTTGGCGCCTGAGATCATCAAAGAAGAGGGACATGGAGCTGCAGTTGACTGGTGGACATTTGGCGTTTTTCTTTATGAGCTGTTATATGGTAGAACACCCTTTAAAGGTTCTAACAATGAAGAAACATTAGCAAACGTGGTATTGCAAAGTCTTAGATTCCCTGATGACCCATTTGTTAGTTTCGAAGCGATGGACCTGATTAGAGGGTTGTTGGTTAAAGAGCCTGAAAACCGTTTGGGTTCACAGAGAGGAGCTGCTGAGATTAAAAAACATCCCTTCTTCGAGGGTCTTAACTGGGCCTTAATTCGTTGTGCTACCCCACCAGAACTTCCAGAGTTTTGTGATTTTGAAGTTTTAGACATGGCCTCACAAGGCAAGGGTGCCAAGTATTTAGAATGTAATGTAGGAGAGCATGTCGAATTCGAGTTGTTTTAA 2628 0.4148 MGSFSGTCEIVEAREDLSRGKGVVGICQSNSRCKTSEKNKKPLVLNLGYKDYIDDDINKLFESFALKSSSRDLGISQDGTSHKLKNTLKKPMTMGVPRSPRVGTSEAANLKQALRDLCISKASEVAAMKRLSKSTASPRISEVGRIQTLYSSVVDETGHFGPYAAESKGHRKEISLVPEKGKSPFLDKTSQSHQTTQITSSSQAINSAWEIAVATTQLDSGTSSMQSDSAGSSSKIGFQSQRVIPVQPEKQTSASYQSLYNASESKLELPVHASSPKKLGNKIVASNTGRKGRLQTASSSSTSVSGTRVNKQPHHAPHTVKMVIKNKNLSKKKVKEDTGSASCDPTSNEVSKSVPGTARLICERCRCALENTGEEKNKEVMIADSTSPGNEVNSSNVHSGSNKPDLASTSGNINKGCKAVGKVVKNTKLKEQLEFSQSSKSSQGEYSSSTSTSDESNMSGSSFGSRPHMSKDVRWEAIRHAQLQHGALGLRHFNLLKKLGCGDIGTVYLAELIGTSCLFAIKVMDIEFLARRKKIPRAQTEREILRMLDHPFLPTLYVQFTSDNLSCLVMEYCPGGDLHVLRQKQLDRCFSELAARFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCAVSPTLLKSSYDVDSTKISRLSAQSSCIEPFCIEPSCQVTCFSPRFLPAAAKSRKLKVDPVAQVRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKEEGHGAAVDWWTFGVFLYELLYGRTPFKGSNNEETLANVVLQSLRFPDDPFVSFEAMDLIRGLLVKEPENRLGSQRGAAEIKKHPFFEGLNWALIRCATPPELPEFCDFEVLDMASQGKGAKYLECNVGEHVEFELF 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04001 875 MobiDBLite consensus disorder prediction 314 328 - -
Tsu07g04001 875 MobiDBLite consensus disorder prediction 378 412 - -
Tsu07g04001 875 SUPERFAMILY Protein kinase-like (PK-like) 469 843 IPR011009 -
Tsu07g04001 875 PANTHER FLIPPASE KINASE 1-RELATED 1 875 - -
Tsu07g04001 875 Gene3D Phosphorylase Kinase; domain 1 492 576 - -
Tsu07g04001 875 MobiDBLite consensus disorder prediction 288 312 - -
Tsu07g04001 875 ProSiteProfiles Protein kinase domain profile. 493 825 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu07g04001 875 Gene3D Transferase(Phosphotransferase) domain 1 577 642 - -
Tsu07g04001 875 Gene3D Transferase(Phosphotransferase) domain 1 718 843 - -
Tsu07g04001 875 ProSitePatterns Serine/Threonine protein kinases active-site signature. 614 626 IPR008271 GO:0004672|GO:0006468
Tsu07g04001 875 MobiDBLite consensus disorder prediction 383 412 - -
Tsu07g04001 875 MobiDBLite consensus disorder prediction 185 201 - -
Tsu07g04001 875 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 875 - -
Tsu07g04001 875 MobiDBLite consensus disorder prediction 434 468 - -
Tsu07g04001 875 MobiDBLite consensus disorder prediction 182 201 - -
Tsu07g04001 875 SMART serkin_6 493 825 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu07g04001 875 MobiDBLite consensus disorder prediction 434 466 - -
Tsu07g04001 875 Pfam Protein kinase domain 722 825 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu07g04001 875 Pfam Protein kinase domain 494 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu07g04001 875 MobiDBLite consensus disorder prediction 220 239 - -
Tsu07g04001 875 MobiDBLite consensus disorder prediction 271 353 - -
Tsu07g04001 875 CDD STKc_phototropin_like 491 843 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04001 Tsu-Chr7 46081460 46086264 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04001 1 875 AGC Kinase Gene Family AT3G52890 50.412 0.0 809
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Tsu07g04001 Pkinase 5.7e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04001 - K08286 mtr:MTR_7g104180 1403.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04001 07 46081460 46086264 Tsu01g02240 01 23647693 23651776 ECH
Tsu07g04001 07 46081460 46086264 Tsu07g04001 07 46081460 46086264 ECH
Tsu07g04001 07 46081460 46086264 Tsu01g02240 01 23647693 23651776 PCT