Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03996 aTGGACTTTCATCTGAAACAATGGAGAAACCAGCATGAGTCAGAAGAGGAACAACATTCCACAAAGATGCCAAAACTTGTTCTTCACCACCCTGCAGAATCCCATCTTCAACAACAATCTTCTGTTACTTCTGCACTTCCTTTCCTTGTTCCTCAATCCAACACCAAACTCACCAACTTGTCAGATTCAATAACATTACCACATCCCCATAACACCAACAGATCATTTCCCAGAATTGGAAGCCATTTTAGCTTATCTCAATGGCAAGAACTTGAGTTACAGGCTTTGATATTTAGGTACATGTTGGTTGGTGCTTCTGTTCCTACTGAACTTCTTCAACCTATCCAGAAAAGTCTTCTTCATTCATCTCCTTATTTTCTTCATCACCCTCTTCAACATTATCAATCTACATCTTtGTTGCAAGCAGGGTATTGGGGAAGAGGAGCAATGGATCCAGAGCCTGGCCGTTGCCGGAGAACCGACGGTAAAAAATGGCGGTGTTCGAGGGATGTGGTGACTGGACAGAAGTACTGTGAAAGACATATGCATCGTGGTAGAAACCGTTCAAGAAAGCCTGTGGAACTTCCCACACCAACTAGTAGTGCCGGTAATGGTGGTGGtaatagtggtggtggtggatctTTCTCTGCTTCACAGTCTGTTGCTACTGCCTCATTCAAATCTCCTTTTAATCTTCTTCATCTCAATGAACGTACCTCTGGGACCAAGAATGAAGACAAAAGCAGCTTATTTGAAAGCGAAGATCATATGGGTGGGGATGGAAGATCAGGTGGGAAAATGCTAAGACATTTCTTTGACGATTGGCCAAGATCACTACAACAAGAGTCTGACAATGCTGAAAACAACAATGGTGGTGGGTCATCATCCACATGTCTCTCAATTTCAATGCCAGGAGGAAATAACAACACTTCTTCTTCAGATATATCATTGAAATTGTCCACTGGCTATGGAGAAGAACCATGCCCAACAAATGTTAATGTGGACCTACAAACTGAGCAACAACAAGTGAATTGGGTCGGTGGATGGAATTCAGGTAATCAAGTATCTTCAATGGGAGGACCACTTGCTGAAGCACTTAGATCATCCACAACAACTTCTTCACCTACTAGTGTTTTACATCAGTTGCCACGTTCTTCTGGTTCTGAAACCAGCTACATTAGTGCCTAA 1188 0.4184 MDFHLKQWRNQHESEEEQHSTKMPKLVLHHPAESHLQQQSSVTSALPFLVPQSNTKLTNLSDSITLPHPHNTNRSFPRIGSHFSLSQWQELELQALIFRYMLVGASVPTELLQPIQKSLLHSSPYFLHHPLQHYQSTSLLQAGYWGRGAMDPEPGRCRRTDGKKWRCSRDVVTGQKYCERHMHRGRNRSRKPVELPTPTSSAGNGGGNSGGGGSFSASQSVATASFKSPFNLLHLNERTSGTKNEDKSSLFESEDHMGGDGRSGGKMLRHFFDDWPRSLQQESDNAENNNGGGSSSTCLSISMPGGNNNTSSSDISLKLSTGYGEEPCPTNVNVDLQTEQQQVNWVGGWNSGNQVSSMGGPLAEALRSSTTTSSPTSVLHQLPRSSGSETSYISA 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03996 395 MobiDBLite consensus disorder prediction 281 319 - -
Tsu07g03996 395 ProSiteProfiles QLQ domain profile. 82 117 IPR014978 GO:0005524|GO:0005634|GO:0006355
Tsu07g03996 395 MobiDBLite consensus disorder prediction 178 220 - -
Tsu07g03996 395 SMART QLQ_2 81 117 IPR014978 GO:0005524|GO:0005634|GO:0006355
Tsu07g03996 395 Pfam QLQ 82 116 IPR014978 GO:0005524|GO:0005634|GO:0006355
Tsu07g03996 395 Pfam WRC 152 194 IPR014977 -
Tsu07g03996 395 MobiDBLite consensus disorder prediction 348 395 - -
Tsu07g03996 395 PANTHER - 8 394 IPR031137 GO:0005634|GO:0006351|GO:0032502
Tsu07g03996 395 PANTHER GROWTH-REGULATING FACTOR 3 8 394 - -
Tsu07g03996 395 MobiDBLite consensus disorder prediction 193 220 - -
Tsu07g03996 395 MobiDBLite consensus disorder prediction 1 22 - -
Tsu07g03996 395 MobiDBLite consensus disorder prediction 281 322 - -
Tsu07g03996 395 MobiDBLite consensus disorder prediction 239 264 - -
Tsu07g03996 395 ProSiteProfiles WRC domain profile. 151 195 IPR014977 -
Tsu07g03996 395 MobiDBLite consensus disorder prediction 236 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03996 Tsu-Chr7 46018926 46023016 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03996 1 382 GRF Transcription Factor Family AT3G52910 47.487 3.48e-87 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Tsu07g03996 WRC 5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03996 - - aip:107648821 529.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03996 07 46018926 46023016 Tsu07g03996 07 46018926 46023016 ECH