Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03985 ATGTCTGAAAACACTACTACAACTTATGCATCCTCATCGTCATCGGGAAAAGTTTTGTCTGGTCGTCATCCGGTATACCGAGGAGTGAGACGTAGGAATAACGGAAAATGGGTATCTGAAATCCGTGAACCTAAAAAACCTAATAGAATTTGGTTAGGAACATATCCAACACCTGAAATGGCAGCTATTGCTTATGATGTAGCTGCTCTTGCTCTTAAGGGTAAAAATGCTATATTGAATTTCCCTaattcttcttcctctttgcCTGTGCCTGAGTCTTCGTCTGCTCGCGATATTCAGACAGCTGCAGCTAGTGCTGCAGCTGCTGTAGGCGCAGCAGAGGATGCACTCGCAAGCAATATTAATGTGGGAAATAATAATCATGCAGCAATGTCGCCGCATGAATTTTTAGCAAGTGCAAATGAGAACAACAATGTTAACCATGAGTTTGTTGATGAGGATTTGATATTTGATATGCCTAATGTTTTGGCTAATATGGCGGAAGGAATGCTTCTAAGTCCTCCTCGTTTTGATTTTGCAAGTAATGAGTATGATGCACAAGAAAATGATATGTGTGATGATTCAAACCTTTGGAGTTATCCTTATTTCCCATAA 615 0.3919 MSENTTTTYASSSSSGKVLSGRHPVYRGVRRRNNGKWVSEIREPKKPNRIWLGTYPTPEMAAIAYDVAALALKGKNAILNFPNSSSSLPVPESSSARDIQTAAASAAAAVGAAEDALASNINVGNNNHAAMSPHEFLASANENNNVNHEFVDEDLIFDMPNVLANMAEGMLLSPPRFDFASNEYDAQENDMCDDSNLWSYPYFP 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03985 204 MobiDBLite consensus disorder prediction 1 19 - -
Tsu07g03985 204 SUPERFAMILY DNA-binding domain 25 83 IPR016177 GO:0003677
Tsu07g03985 204 CDD AP2 26 84 IPR001471 GO:0003700|GO:0006355
Tsu07g03985 204 Gene3D AP2/ERF domain 25 83 IPR036955 GO:0003700|GO:0006355
Tsu07g03985 204 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 6 201 - -
Tsu07g03985 204 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Tsu07g03985 204 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 6 201 - -
Tsu07g03985 204 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Tsu07g03985 204 PRINTS Ethylene responsive element binding protein signature 64 84 IPR001471 GO:0003700|GO:0006355
Tsu07g03985 204 MobiDBLite consensus disorder prediction 1 23 - -
Tsu07g03985 204 Pfam AP2 domain 24 74 IPR001471 GO:0003700|GO:0006355
Tsu07g03985 204 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03985 Tsu-Chr7 45915703 45916317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03985 21 201 AP2-EREBP Transcription Factor Family AT2G36450 64.286 2.48e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu07g03985 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03985 - - gmx:100799620 223.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03985 07 45915703 45916317 Tsu07g03985 07 45915703 45916317 ECH
Tsu01g02247 01 23735908 23736459 Tsu07g03985 07 45915703 45916317 PCT