Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03984 ATGGAagaccatcatcatcatcatcatcataatcatcaccACCATGAACacgaacaacaacaacaacaacactatGTTAATGTTAGAAGTAACACTAACACAAACAGTATTACTGATTTCAGACAACTCATGAATATTGGacaaagaacaacaacaacatcaacaacgaCAACAGAACATTTCCCTACGGCGGAGTTATTCCCCGCCGTTAACCCAAATCTGACAGTCACACCAACACATCAACACTATGAGATGATGATGTTTGGTCGCCAAATATCTGATATAATGCCTCGCTCATTTCATGACTTTGTTTCAACAGATTCTGCTGCTGCTGCTAATGCTATTGCTACAACTAGTGCTTCAACGCCAACTCTTAGTGGTAATTTAGAACCTGAAACAACAACTGGTTGCTTAGGTGTTGTTGATGCTTCTAATGGTAGATGGCCTAGACAAGAAACTCTTACTCTTCTTGAGATTAGATCTCGTCTTGATTCTCAATTCAAAGAAGCTACTCAAAAGGGTCCTCTTTGGGATCAACTTTCTAGGATAATGTGCGAGGAACATGGATATCAAAGGAGTGGAAAAAAATGCAGGGAGAAGTTTGAGAATCTATACAAAtactacaaaaaaacaaaagaaggaaAAGCAGGAAGACAAGATGGAAAACATTATAGATTTTTTCGACAGCTTGAAGCCttatatggtcaaaacaataacccctcttcatcttcaatcccagaaaacaatttttgtaaCAATCAAGAAATGTTTCATTCTCAAAACAAACATTGTGATAGCCTTAGCCTCACAAACTCCACTGAATTCGACACATCTTCGTCCGATAACGATGATCATAATGAAAGCTCCATggagaagagaaaaaagaagatgagtGGAAGAAGCTTCTGGAAAGTAAAGATAAAAGACTTCATTGATTCACAAATGAAGAAGTTGGTGGTGAAGCAAGAGGAATGGTTAGAGAAACTCACAAAGACATTGGAacaaaaggaaaaggaaagagTGTTAAGAGAAGAAGAATGGAGAAAACAAGAGAAAGAAAGGTTGGAAAAAGAACACAAATTTTGGGCTAAAGAAAGAGCATGGATTGAAGCAAGAGATGCTGCTTTAATGGAAGCTTTGCATAAATTAAAAGGAAATGACGAGATAATAAATACTCAAACTTCTTCTCATGATGGaaacaagaaaagaaaggaaaactCAACAAGAAATTGTTTTTACTTTGATAATAACAACAATGTTGATAGGTCTTGTTTGTATAATAACAATGGAGGAGGTTCCTATTGTGGTGATGTTAATGATCAAAGAGAAGAACTTGGAAGAGTAGTTAGAAATGATGGTTCAAATTCTAGTAATGTTGTTGTTGCAGCTGAAAATTGTTTTCCATTGTTGATGAGTGAGGGAGGAAATTTGTGGGAGAATTACAGCTTAAAGGTTAGTAAAGCAAACCAAAATCAGTGA 1479 0.309 MEDHHHHHHHNHHHHEHEQQQQQHYVNVRSNTNTNSITDFRQLMNIGQRTTTTSTTTTEHFPTAELFPAVNPNLTVTPTHQHYEMMMFGRQISDIMPRSFHDFVSTDSAAAANAIATTSASTPTLSGNLEPETTTGCLGVVDASNGRWPRQETLTLLEIRSRLDSQFKEATQKGPLWDQLSRIMCEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGQNNNPSSSSIPENNFCNNQEMFHSQNKHCDSLSLTNSTEFDTSSSDNDDHNESSMEKRKKKMSGRSFWKVKIKDFIDSQMKKLVVKQEEWLEKLTKTLEQKEKERVLREEEWRKQEKERLEKEHKFWAKERAWIEARDAALMEALHKLKGNDEIINTQTSSHDGNKKRKENSTRNCFYFDNNNNVDRSCLYNNNGGGSYCGDVNDQREELGRVVRNDGSNSSNVVVAAENCFPLLMSEGGNLWENYSLKVSKANQNQ 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03984 492 MobiDBLite consensus disorder prediction 1 24 - -
Tsu07g03984 492 Gene3D - 148 210 - -
Tsu07g03984 492 MobiDBLite consensus disorder prediction 272 295 - -
Tsu07g03984 492 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 388 483 - -
Tsu07g03984 492 PANTHER - 57 393 - -
Tsu07g03984 492 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 57 393 - -
Tsu07g03984 492 Pfam Myb/SANT-like DNA-binding domain 147 233 IPR044822 -
Tsu07g03984 492 ProSiteProfiles Myb-like domain profile. 140 205 IPR001005 -
Tsu07g03984 492 Coils Coil 319 346 - -
Tsu07g03984 492 MobiDBLite consensus disorder prediction 278 295 - -
Tsu07g03984 492 PANTHER - 388 483 - -
Tsu07g03984 492 CDD GT1 147 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03984 Tsu-Chr7 45901645 45904458 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03984 400 487 Trihelix Transcription Factor Family AT5G03680 34.694 7.99e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Tsu07g03984 Myb_DNA-bind_4 2.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03984 - - cam:101499561 534.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03984 07 45901645 45904458 Tsu07g03984 07 45901645 45904458 ECH
Tsu07g03984 07 45901645 45904458 Tsu01g02252 01 23795160 23798710 PCT