Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03980 atggatATGGAGAGTACGCGTAGATCGTTGGATAGATCGAGAGAACAACCAGGTGCTAAGAAGCCTCGATTGATCGATGAGCTTCAACAAGCTTCAAATCCAACTTCACGACCGTTTTCTCAACGACAAGGTGGTGGTGGTTCTGGTGTTGCTTCGATTTTATCGTCTGGTAGGTTTCGAATGAATGATAGAGATTCAGATAGTAGTGATGGTGGTTATCATCCACAACCACCGCCGCATCAAGAGCTTGTGACTCAGTATAAGGCTGCTCTTGCTGAACTTACTTTCAACTCGAAACCTATAATTACCAATTTGACTATAATTGCTGGAGAGAATCTTTCTGCTGCAAAATCAATTGCTGGTGCTGTCTGTGCTAACATTCTTGAGGTACCAAGTGACCAAAAGCTGCCATCTCTTTATCTCTTAGACAGTATTGTTAAGAATATTGGGCGGGATTACATAAAATACTTTGCTGCCAGATTACCTGAGGTATACTGCAATACATACAGACAGGTTGAGCCTCCTGTCCATTCAAGTATGAGGCATCTTTTTGGAACTTGGAGAGGAGTCTTTCCTCCTCAGACCCTTCAGATAATTGAGAAGGAACTCGGCTTCACTCCCGCAGTCAATGGTTCAGCTTCTGCATCTGCCACCCTTAGAAGTGATTCCCAGTCTCAACGCCCAGCTCATAGCATTCATGTGAATCCCAAATATTTAGAAAGGCAACGTCTTCAGCAGTCCAGCAGGACCAAGGGAGTATTTAATGAAATGTCTGGAGTTATTTCAAACTCAAATGAGGACCCAGAGAGGCCCGATAGAGCATTGGGTGTTGCACGACCATGGCTGGATCCTAGGCTTAACATGCATAATAATCAGCGTACTCATAGAGATGCATTTAATGATTCCGTTCCTGAGAAGAGCATTGGCGGTGCCTACGGGGACAATGAATATAATTCTACTCTTTCAAATAATTTGGGCTCAGGTGTTGGAAGAACTGGAAGTAGGCTCATTGGCGGTGTTGCAGAGACCTTATCCGGGCAAAGAAGTGGTCTCAGCCTCAAACATGGTTTTTCAAATCATGAAGCACCAAAACCTATGAATTTGGATGCACATAACATCAGGAACAGTGTGATGTCAAGGAACTGGAAAAATTCAGAGGAAGAGGAGTTCGTGTGGGATGAGATGAACTCTGGAGTGCCTGATCATGTACCTAATGTCTCTAGCAACTTGAACTCAGACCCATGGATGGCCGATGATGACAATTTGGAAACTGAAGATCACCTCCAAATCACACACCCAATTGGAAGAAAGGTTGATAAAGAAATACCCATTGTTAAGAAACAACTACCATCATCCGGGGGTCATCCATCATTATCATGGGAATTGCAGAAGCAGATCCCAAGTGGCAAACTGAATATGAAGTCAggtcaaaattcaaattctttgGCTGCGAAGATGAGGAATCAGTCTTCTATGCCACATACAACAATAGGAACAGCCAAAATTATGGGACAGCAGGAATTTGATTCTGAGGGGGCCGAATCCCCTTCTGAACAGTCACCTTCCCGACTACAGTCTCTATCAGTGCCAGTAACAACATATCACCCTCCTTCAAGTCAATATATTAGAGATCCCGCACCTGCCATTGGTCCCAATGTTCAGGTTGGTAACTTTCGAAAATCACAAGAAAAGGACTTGCGGGGTCCATTATCTTCGGCAACTTCttttcagccaaaacctcagcAACGGCAGCTGGGCCCATCACAGGCTGAAGTTACTCTTAAAGCTAAGCAGCCACCCAAGTCTAAAGTTTCTTTAGCCAAAGCCAAAACCACAGCCACTTCAGAAAAGTCATCCACGAAGAGTCTTCCAGCTCCATCTGTGAAGAGTGGAATCATCCCCAACAAATCAATTACCAGAAGTCTGGATGCAAGTAATCGTCCATCTCAATCAGGGGTTAAGCCTACTCGGTCAGTTGGTCCTTCCCCTATCACATTAGTTTCTCCAAGTTCTTCAGCCGTGTCATTAGGTTCTCCAAACGATTATCCACAGACTTTGCCAAAATTACTTCAAGGGAAGGCTGGAAAGAAGCAAAAGGATTCTAATCAACCCTCTGCTTCCTCTAATGAACGCGGCGCATCAGCTCCGGGCTCAAATGCTGCCAATAAGAATACCTTAAATCCATTTTCAAATCTTCTGAGCTCTCTAGTTGCCAAAGGTTTGATATCTGCAGGTGCGGAGTCAGCAACTGTATTGCCAAGTGAGACGGTGATGCGATCGAAAGATCAAACTGAAAGCATTACTGCCAATTCCTCTTTGCCAGTTGCTTCAGCTCCTGATTCTGCAGCCGTCCCGTTAAAATCTTCCAGAGATGAGGCAGATGCTGCTGCAAAAGCCTCGCTTGCCTTGTGTCAATCAACTAGCACAGAAATTAGAAATCTTATTGGCTTTGATTTCAAACCTGATGTAATTCGAGAAATGCACCCACATGTAATCACAGAATTATTGGATGAACTCCCACATCATTGCAGTAATTGTGGTATTAGGCTTAAACAGCAAGAACAGTTTGATAGGCACTTGGAATGGCATGCTACAAAAGAAAGAGAACAAAGTGGTCCTACTGGAGCATCAAGAAGATGGTATGCTAAGTCAGAGGACTGGATTGCTGGCAAGGCCGAATATCTATCCGAGTCTGAATTTACCGATTCTGCTGATGAATATGATGATAAAATTGCAGATGGCAGTCAATTGGATTCTATGGTTGTAGCAGACGAAAACCAGTGCTTGTGTGTACTGTGTGGCGAACTATTTGAAGATGTATTCTGTCAGGAAAGGGACCAGTGGATGTTCAAGGGGGCTGTTTATCTGAACAATTCAGATAGCGATAGTGAGATGGAAAGTAGAAATTTGGGCCCCATCATTCATGCTAGATGCTTATCAGAGAACTCAATATCTGGTGTGATCAATACAGAACATGATTAA 2982 0.4316 MDMESTRRSLDRSREQPGAKKPRLIDELQQASNPTSRPFSQRQGGGGSGVASILSSGRFRMNDRDSDSSDGGYHPQPPPHQELVTQYKAALAELTFNSKPIITNLTIIAGENLSAAKSIAGAVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVYCNTYRQVEPPVHSSMRHLFGTWRGVFPPQTLQIIEKELGFTPAVNGSASASATLRSDSQSQRPAHSIHVNPKYLERQRLQQSSRTKGVFNEMSGVISNSNEDPERPDRALGVARPWLDPRLNMHNNQRTHRDAFNDSVPEKSIGGAYGDNEYNSTLSNNLGSGVGRTGSRLIGGVAETLSGQRSGLSLKHGFSNHEAPKPMNLDAHNIRNSVMSRNWKNSEEEEFVWDEMNSGVPDHVPNVSSNLNSDPWMADDDNLETEDHLQITHPIGRKVDKEIPIVKKQLPSSGGHPSLSWELQKQIPSGKLNMKSGQNSNSLAAKMRNQSSMPHTTIGTAKIMGQQEFDSEGAESPSEQSPSRLQSLSVPVTTYHPPSSQYIRDPAPAIGPNVQVGNFRKSQEKDLRGPLSSATSFQPKPQQRQLGPSQAEVTLKAKQPPKSKVSLAKAKTTATSEKSSTKSLPAPSVKSGIIPNKSITRSLDASNRPSQSGVKPTRSVGPSPITLVSPSSSAVSLGSPNDYPQTLPKLLQGKAGKKQKDSNQPSASSNERGASAPGSNAANKNTLNPFSNLLSSLVAKGLISAGAESATVLPSETVMRSKDQTESITANSSLPVASAPDSAAVPLKSSRDEADAAAKASLALCQSTSTEIRNLIGFDFKPDVIREMHPHVITELLDELPHHCSNCGIRLKQQEQFDRHLEWHATKEREQSGPTGASRRWYAKSEDWIAGKAEYLSESEFTDSADEYDDKIADGSQLDSMVVADENQCLCVLCGELFEDVFCQERDQWMFKGAVYLNNSDSDSEMESRNLGPIIHARCLSENSISGVINTEHD 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03980 993 ProSitePatterns Zinc finger C2H2 type domain signature. 843 863 IPR013087 -
Tsu07g03980 993 Gene3D - 76 204 IPR008942 -
Tsu07g03980 993 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 3 990 - -
Tsu07g03980 993 MobiDBLite consensus disorder prediction 240 265 - -
Tsu07g03980 993 MobiDBLite consensus disorder prediction 507 723 - -
Tsu07g03980 993 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 3 990 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Tsu07g03980 993 MobiDBLite consensus disorder prediction 1 80 - -
Tsu07g03980 993 SUPERFAMILY ENTH/VHS domain 79 207 IPR008942 -
Tsu07g03980 993 MobiDBLite consensus disorder prediction 216 231 - -
Tsu07g03980 993 MobiDBLite consensus disorder prediction 510 539 - -
Tsu07g03980 993 MobiDBLite consensus disorder prediction 605 685 - -
Tsu07g03980 993 MobiDBLite consensus disorder prediction 216 272 - -
Tsu07g03980 993 MobiDBLite consensus disorder prediction 28 50 - -
Tsu07g03980 993 Pfam CID domain 88 197 IPR006569 -
Tsu07g03980 993 ProSiteProfiles CID domain profile. 79 207 IPR006569 -
Tsu07g03980 993 SMART 558neu5 82 204 IPR006569 -
Tsu07g03980 993 MobiDBLite consensus disorder prediction 1 22 - -
Tsu07g03980 993 MobiDBLite consensus disorder prediction 696 723 - -
Tsu07g03980 993 MobiDBLite consensus disorder prediction 567 591 - -
Tsu07g03980 993 CDD CID_Pcf11 84 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03980 Tsu-Chr7 45867839 45874706 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03980 815 981 C2H2 Transcription Factor Family AT4G04885 36.000 2.75e-31 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03980 K14400 - gmx:100788958 1172.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03980 07 45867839 45874706 Tsu07g03980 07 45867839 45874706 ECH