Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03978 ATGGAGTTTTGGGGTGTTGAGGTTAAAAGCGGAGCATCACTCAAGGTTGAGCCAGAAGATGACAAGATTATCCACCTTTCAGCGGCATGTTTGGGGGAGGTCAACAAGGATAAAGGGGGTGAACCAGTATCCGTGTATGTGAAGATTGATAATCAGAAGCTTCAACTTGGAACACTTTCTTCAGAAAAAATTCCTCAGATATCTTATGATTTGGTATTTGAGAAGGAATTTGAGCTATCCCATAACTGGAAATATGGAAGCGTCTTCTTTACTGGATTTAAAGTGGAATCTCAGCTGGTTTCtgatgatgatgaagattctGATGATTCTATTGAGGAAGATACTCCAGTTAATGCTGCTAATGGGAAACCTGAGTTTGAGGTTAAGAATGGTGTCAAACCTGGTGTAAATGAAGCTCAACAAAATAAGACATCAGATCCAAAAAAGAAGCAGAAGGATATTGAAAATGATGTTGGTGCTGACGATAAAGAAGATTCATCTGAATCTGACTCTGATGAGGATTCTAGTGAAGATGAGCCCATAGTGAATGGTAAAATTGAAAGTAGTGAAGATGACGACGACAgcgaagaggatgatgaagattcTGATGATGAGACACCGAAGAAGactGAAGAGAGCAATAAAAGGGCTGCTGAATCTTCCAAGAAAACACCTGTACCTGTGAAGAAAGCAAAATTTGTTACTCCAGAAAAGACCGGTGGCAAGAATAGTGTTCATGTTGATACTCCTTATCCTAAGGCTGGTAAATCAGGTGCAACTAACAAGCAGCCACCGAAGCAGCAGACTCCACAGTCAACTGGAGAATACAGCTGTAAACCTTGCAACAGGTCATTCAAGACTGAAGATGCCTTAGGTTCTCATAACAAGGCCAAGCACAGTGCCAAGTGA 909 0.3927 MEFWGVEVKSGASLKVEPEDDKIIHLSAACLGEVNKDKGGEPVSVYVKIDNQKLQLGTLSSEKIPQISYDLVFEKEFELSHNWKYGSVFFTGFKVESQLVSDDDEDSDDSIEEDTPVNAANGKPEFEVKNGVKPGVNEAQQNKTSDPKKKQKDIENDVGADDKEDSSESDSDEDSSEDEPIVNGKIESSEDDDDSEEDDEDSDDETPKKTEESNKRAAESSKKTPVPVKKAKFVTPEKTGGKNSVHVDTPYPKAGKSGATNKQPPKQQTPQSTGEYSCKPCNRSFKTEDALGSHNKAKHSAK 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03978 302 MobiDBLite consensus disorder prediction 101 302 - -
Tsu07g03978 302 MobiDBLite consensus disorder prediction 260 280 - -
Tsu07g03978 302 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 1 298 - -
Tsu07g03978 302 MobiDBLite consensus disorder prediction 143 159 - -
Tsu07g03978 302 MobiDBLite consensus disorder prediction 207 226 - -
Tsu07g03978 302 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 1 298 - -
Tsu07g03978 302 MobiDBLite consensus disorder prediction 160 177 - -
Tsu07g03978 302 MobiDBLite consensus disorder prediction 189 206 - -
Tsu07g03978 302 Gene3D Nucleoplasmin core domain 1 99 - -
Tsu07g03978 302 ProSitePatterns Zinc finger C2H2 type domain signature. 278 299 IPR013087 -
Tsu07g03978 302 ProSiteProfiles Zinc finger C2H2 type domain profile. 276 302 IPR013087 -
Tsu07g03978 302 Pfam Nucleoplasmin-like domain 3 93 IPR041232 -
Tsu07g03978 302 Pfam C2H2-type zinc finger 276 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03978 Tsu-Chr7 45834426 45838789 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03978 1 301 C2H2 Transcription Factor Family AT5G03740 43.506 2.11e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu07g03978 NPL 1.8e-10 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03978 - - ccaj:109796568 366.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03978 07 45834426 45838789 Tsu07g03978 07 45834426 45838789 ECH