Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03973 atggatcatttttcttctactaGTACTACTATTCCTTTTGCATTACAAGGAGCAAAAGATGACATAACAATGCAAATTTCTTTGATTTGGAATCAAATCAAAGCACCATTGATTGTTCCATTACTAAGAATATCAGTATTTTTGTGTTTAATAATGTCGGTAATGATGTTTATTGAAAGAGTTTATATGGGTGTTGTTATCACTCTTGTGAAGCTATTTGGAAGAAAACCTGAAAAACGTTACAAATGGGAACCAATTAAGGATGATATTGAGTTGGGAAACTCTTGTTATCCAATGGTTGTTGTTCAAATCCCTATGTACAATGAAAGAGAGGTTTATCAATTGTCAATTGGAGCTGCATGTGGTCTTTCATGGCCTTCTGATAGAATCATAATACAAGTTCTTGATGATTCCACTGACCCAACAATCAAGGAATTGGTGCAACTAGAATGCCAAAGATGGGCAAGTAAAGGTGTGAATATAAAATATGAAGTTAGGGACAATAGAAAAGGATACAAAGCAGGGGCATTAAAGGAAGGAATGAAGCATAGCTATGTGAAACAATGTGATTATGTTGCAATCTTTGATGCTGATTTTCAACCAGAGCCTGATTTCTTATGGCGTACAGTGCCATTTATGGTGCATAATTCTGAACTTGGTCTTATTCAAGCTAGATGGAAATTtgTGAATGCCGATGAATGTATGATGACCAGAATGCAAGAGATGTCACTAGATTACCATTTTACTGTGGAACAAGAAGTGGGTTCTTCCACTTATGCCTTCTTTGGCTTCAATGGGACTGCGGGAGTTTGGAGAATTGCGGCGCTGAATGAGGCTGGTGGGTGGAAAGATAGGACTACCGTTGAAGATATGGACTTGGCCGTTCGAGCTAGTCTCAAAGGATGGAAATTCTTATACTTGTCTACTTTGAAGGTTAAAAATGAATTGCCAAGTACTTTCAAGGCCTACCGTTACCAACAACATCGTTGGTCTTGTGGACCGGCCAATCTTTTCAGGAAAATGGTCATGGAGATAATTAGAAACAAGAAAGTGACCTTGTGGAAGAAGATACATGTCATTTACAGCTTCTTCTTTGTTAGAAAAGTCATAGCACACATCAATACATTTGTATTTTATTGCATTGTACTACCAGCAACTGTTTTGGTACCTGAGGTTGCGGTCCCTAAATGGGGAGCCGTTTATATCCCTTCAGTTATCACCCTTCTCAATGCAGTCGGAACTCCAAGGTCACTCCATCTACTtgtcttttggattttatttgaGAATGTTATGTCTCTACATCGAGCGAAGGCTACTGTTGTTGGTCTATTGGAGACTAGTCGAGTGAATGAATGGGTTGTGACTGAGAAACTTGGAGATGCACTTAAGATTAAAGCAGGAACTAAAGCACTCAAGAAGCCTCGATTCAGGATCGAAGACAGAATTCACTTGTTAGAAGTTGGAGTTGGGATGTACCTCTTCTTTATTGGTTGCTACGATGTTATGTTCGGGAAAAATCAgttcttcatctttctctttATCCAAGCACTCGCCTTCTTCATCATGGCATTTGGATATATTGGAACTTTTGTTCCCAACTCCTAG 1605 0.3751 MDHFSSTSTTIPFALQGAKDDITMQISLIWNQIKAPLIVPLLRISVFLCLIMSVMMFIERVYMGVVITLVKLFGRKPEKRYKWEPIKDDIELGNSCYPMVVVQIPMYNEREVYQLSIGAACGLSWPSDRIIIQVLDDSTDPTIKELVQLECQRWASKGVNIKYEVRDNRKGYKAGALKEGMKHSYVKQCDYVAIFDADFQPEPDFLWRTVPFMVHNSELGLIQARWKFVNADECMMTRMQEMSLDYHFTVEQEVGSSTYAFFGFNGTAGVWRIAALNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLSTLKVKNELPSTFKAYRYQQHRWSCGPANLFRKMVMEIIRNKKVTLWKKIHVIYSFFFVRKVIAHINTFVFYCIVLPATVLVPEVAVPKWGAVYIPSVITLLNAVGTPRSLHLLVFWILFENVMSLHRAKATVVGLLETSRVNEWVVTEKLGDALKIKAGTKALKKPRFRIEDRIHLLEVGVGMYLFFIGCYDVMFGKNQFFIFLFIQALAFFIMAFGYIGTFVPNS 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03973 534 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 91 313 IPR029044 -
Tsu07g03973 534 Pfam Glycosyltransferase like family 2 99 333 - -
Tsu07g03973 534 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9-LIKE 1 533 - -
Tsu07g03973 534 SUPERFAMILY Nucleotide-diphospho-sugar transferases 97 376 IPR029044 -
Tsu07g03973 534 CDD CESA_CaSu_A2 98 334 - -
Tsu07g03973 534 PANTHER - 1 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03973 Tsu-Chr7 45796907 45803877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03973 3 533 Miscellaneous Gene Families AT5G03760 79.699 0.0 922
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03973 K13680 - gmx:100782772 989.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03973 07 45796907 45803877 Tsu01g04019 01 47979465 47982514 ECH
Tsu07g03973 07 45796907 45803877 Tsu07g03973 07 45796907 45803877 ECH
Tsu07g03973 07 45796907 45803877 Tsu01g02224 01 23326575 23328262 PCT