Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03961 ATGGTTTCCTATGATCAACCTCATCAATCAATAAAACAAGGCTACCCTTATTCATCAAAaaccaacaacaataacaaaccaCAACAACAAATCAACCTAAGCGACGAAGACGAACCGTGTTTCGGAGCAGATGAAACCTCTATTGGTGatccaaaaagaaaaggatCACCATGGCATAGAATGAAATGGACAGATACAATGGTAAGACTTTTAATAATGGCTGTTTATTACATTGGTGATGAAGCTGGTACTTCTGAATTAGGAATAGGCACcgataataaaaagaaaacaaatggtTTATTACAAAAGAAAGGTAAATGGAAATCGGTTTCTAAAGGAATGATGGAAAAAGGTTACTATGTATCACCTCAACAATGTGAAGATAAGTTCAATGATTTGAACAAAAGATACAAAAGAGTGAATGATATTCTTGGTAAAGGAACAGCTTGTAGAGTTGTTGAAAATCAAAGTTTATTGGATAGTATGGATTTGTCTATAAAATTGAAAGATGAAGCTAGAAAACTTTTGAATTCAAAGCATCTTTTCTTTAGAGAAATGTGTGCTTATCATAATAGTTGTGGACATGGAAACAATAACAATTTACAACAACAATCTTCGACCGAGACTCAACCacaacatcaacatcaacaacagcagcagcagcaacagcaacaacaatGTTTGCATTCTTCAAATGGGGTaggaatgttgaagttgaaaggaaaaagtggagaagaagaagaggatgaagatgaagaagatgaatgggAAGATGATtctgaagaggaagaagatgagaCTATTGAAGATGATGAGAATATTGATCATTTGAggaaaaaatcaaagaaagttACATCACAAGTTATGCAACAGTTGAGTAGTGAAGTGATGAATGTGTTGCAAGATGGAGTGAAGAGTAGTTGGGAGAAAAAACAATGGATGAAGAAAAGGGTGGTGCAATTAGCAGAAgaacaaataaattatcatgTTGAAGCATTTGAGATTGAAAAACAAAGGTTAAAATGGGCAAAGTTTAGTGGTAATAAAGAGAGGGAAATGGAGAGAAATAAACTTGAAAATGAAAGGAGGAGTTTGGAAATTGATAGAATGGTTTTGTTGCTTAGACAGAAGGAGCTTGAGTTGCAGAATACTCAGCAGATGCAACAACAGCAACATTCTTCTACTTAG 1188 0.2778 MVSYDQPHQSIKQGYPYSSKTNNNNKPQQQINLSDEDEPCFGADETSIGDPKRKGSPWHRMKWTDTMVRLLIMAVYYIGDEAGTSELGIGTDNKKKTNGLLQKKGKWKSVSKGMMEKGYYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVENQSLLDSMDLSIKLKDEARKLLNSKHLFFREMCAYHNSCGHGNNNNLQQQSSTETQPQHQHQQQQQQQQQQQCLHSSNGVGMLKLKGKSGEEEEDEDEEDEWEDDSEEEEDETIEDDENIDHLRKKSKKVTSQVMQQLSSEVMNVLQDGVKSSWEKKQWMKKRVVQLAEEQINYHVEAFEIEKQRLKWAKFSGNKEREMERNKLENERRSLEIDRMVLLLRQKELELQNTQQMQQQQHSST 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03961 395 Coils Coil 246 266 - -
Tsu07g03961 395 Pfam Myb/SANT-like DNA-binding domain 60 188 IPR044822 -
Tsu07g03961 395 Coils Coil 348 375 - -
Tsu07g03961 395 MobiDBLite consensus disorder prediction 1 35 - -
Tsu07g03961 395 MobiDBLite consensus disorder prediction 198 232 - -
Tsu07g03961 395 MobiDBLite consensus disorder prediction 246 271 - -
Tsu07g03961 395 MobiDBLite consensus disorder prediction 1 58 - -
Tsu07g03961 395 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 5 395 - -
Tsu07g03961 395 PANTHER F16F4.11 PROTEIN-RELATED 5 395 - -
Tsu07g03961 395 Gene3D - 63 139 - -
Tsu07g03961 395 MobiDBLite consensus disorder prediction 198 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03961 Tsu-Chr7 45715169 45716356 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Tsu07g03961 Myb_DNA-bind_4 4.7e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03961 - - aprc:113863792 471.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03961 07 45715169 45716356 Tsu07g03961 07 45715169 45716356 ECH
Tsu07g03961 07 45715169 45716356 Tsu01g02285 01 24224974 24226692 PCT