Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03953 ATGGATTGGAATATTGAGAGCACAAGACCCTTTGTTCCTCATGCAGAATCTTCCTTAAGCTTCTTCTACAACTATAACAACACCCCTTATTCAGGAATGGATGTGAGTCAAGCAGCAATGGGTGAGACACAACAAAGGTTGCTTCCAGCAATGGATGAAATGAACATCAATGGGAATAATtacaaagagaagaaaaagagattAACAAGTAATCAAATTGATTTACTTGAGAGAAGTTTCCAAGAGGAAATAAAATTAGATCCTGAAAGGAAGATAAAGCTTTCAAGAGAGCTAGGGCTTCAACCTCGACAAATTGCTGTTTGGTTCCAAAATCGGCGTACAAGGTGGAAGGCTAAGCACCTTGAACACTTATATGATGTGCTTAAACAAGAATTTGATGTTGTCTCTAAGGAAAAGCAGAAACTTCAAGAAGAGGTTTTGAAGTTGAAGGGAAAGCTAAAAGAACAAAGTAATTTTAGGACACAGCAAACATTTGTTGAAGAAACAGTAGAAAGCACATCAAAAGGACTAAGATGTTCTAACAAACCACAAGGAGGAACTGTAGAGAAttacaccaacaacaacaacaacaacaacatcaatagTACTTGTTTCACTGTTGAAGATTTTAATAACCCTGTTTCAATGCCTCCTCAACAATGTCACTGGCCTGTGTTACCTAATTATTATCCCTAA 696 0.3434 MDWNIESTRPFVPHAESSLSFFYNYNNTPYSGMDVSQAAMGETQQRLLPAMDEMNINGNNYKEKKKRLTSNQIDLLERSFQEEIKLDPERKIKLSRELGLQPRQIAVWFQNRRTRWKAKHLEHLYDVLKQEFDVVSKEKQKLQEEVLKLKGKLKEQSNFRTQQTFVEETVESTSKGLRCSNKPQGGTVENYTNNNNNNNINSTCFTVEDFNNPVSMPPQQCHWPVLPNYYP 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03953 231 Coils Coil 125 152 - -
Tsu07g03953 231 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 225 IPR045224 GO:0003700
Tsu07g03953 231 Coils Coil 51 71 - -
Tsu07g03953 231 SMART HOX_1 62 123 IPR001356 GO:0003677
Tsu07g03953 231 Pfam Homeodomain 62 117 IPR001356 GO:0003677
Tsu07g03953 231 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
Tsu07g03953 231 CDD homeodomain 62 120 IPR001356 GO:0003677
Tsu07g03953 231 Pfam Homeobox associated leucine zipper 119 153 IPR003106 GO:0006355|GO:0043565
Tsu07g03953 231 Gene3D - 56 124 - -
Tsu07g03953 231 SUPERFAMILY Homeodomain-like 51 119 IPR009057 -
Tsu07g03953 231 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
Tsu07g03953 231 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03953 Tsu-Chr7 45633771 45635410 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03953 1 149 Homeobox Transcription Factor Family AT5G03790 53.939 8.44e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tsu07g03953 Homeodomain 2.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03953 - - ccaj:109798071 233.417