Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03940 ATGGAAGCTTCCGTGAAGCCAGAATCGGAATCCACAACGGTTTCTCTTGATCAGTCTCACGATGAACGGAAAAATTCTACGGTCAACGGTTGCATTGTTTATACTCGAGTCAAGAGGTCTCTCAATTCTTGTAATGGTTTTTCTGAAGACCTTGATTCGAAGAGATTTAAAGAGAATGCAGAGGTTCCGCTTGAATTCGAGAATGGAATCGATTGCTGCACTGGAAGTAGGGATGGTGAGCTGAAGAGTGAGCAGGTTCCGGTGACGACATTCAAGCGGATTACAAGATCAGCTATGAAAGCGAAGGTTGAGTCCGGTGAAGAGACCGTGACTGTGTTAGAACAACAAGGTGATGCCGTTGGAGCTGTTGATATTGATAATGGCGATGATAAGATGCCCGTGAGGAATTTCAAGCGAATTACACGTTCCGCGATGAAAGAAAAGGTTGAGTCTGGTGAGGATAAGGGGAATGTGATAGAACAACATGGTGCTGATGTTGCAAATGGTAAAGGTGATGGTAAGGTGTCTGTGTCTGTACGGGTTACACGATCGGCTATGAAAGTAAAGGTTGAGTCTGGTGAGGATAAGGATAAGGTGACTGAGTTAGAACAGCATGGTGCTGCTGTTGCAAGTGGTGAAGTTGATAGGACGTTCAAGCGTGTTACACGATCGGCAGCATTGAAAGCGGATGAGGAGATTGTGACAGAGTTAGAACAAGATACTTCTGTGGTTGCGAGTGAAGTTGATGGTGCATTACCTGCTTTGAGAAACAAGATGGAGTTGAAAATGTCGAAGAAGATTGTGGTCAATAAGAAGCCTAAAACAGTCAAGGAGCTCTTCCGTACGGGATTACTTGATGGCATCTCTGTGGTTTACATTCGCGGCATTACGAAGGCGCCGGGATTAAAGGGTGTTATAAGAGATGGAGGAATATTATGTTCATGCTGTCTCTGTAATGGACGCAAGgTTATTCCACCTTCCCAATTTGAGATCCATGCTTGCAAACAATATAAGAGAGCAGTAGAGTATATTTGTCTTGAAAATGGGAAGAGCCTGCTTGATCTGTTGAGAGCGTGCAGGGGAGCTCCCTTGCATGCTTTGTTGgcaacaattcaaaattttgtcTGTTCAACACCTgtggaaaaatattttacttgTAAAATGTGCAAAGGATGTTTTCCATCATGTATGAAAAGAGTGGGACCTATATGCTGTTCTTGTGTAGAATCAAGTAAATCTGAAGAAACTGCCAAGAATGTAGTTGGCAAAAGAATCAGGTCTCCTAGACCAGTGTTGGCCTCCAAATCATCTTGTGCTTCTGAGCTGTCTATCTTTTCAAAAAGTAAGATACAcaagaagaaaagaacaaaGTCATCAATAAGGTTCAGCAGCTCAAATTCTTCCAAGAGTGCTTCTGTGCCCATTCTTCCCCAGAAGAAAATTATGCCGAAGATGAAAAAGAAGTCATCATCCGTAAAGTTGAAGACcacttcaaattcaaattgttTATCTCCACAAAATAAGTGTCAATGGAAGATAACTAAGAAGGACCATCGGCTGCACAGGTTAGTATTTGAGGAAAATGGATTGCCTGATGGAACTGAAGTAGCTTATTATGCAGGCGGACAgAAATTGCTTGAAGGTTTCAAAAGGGGCTCTGGAATTGTTTGCAGATGCTGCAACACAGAGATCAGCCCCTCGCAGTTTGAGGTCCATGCAGGCTGGGCTTCTCGCAAGAAACCGTATGCATACATTTACACATCAAATGGGGTCTCTCTCCATGAATTATCAATATCTCTCTCAAAAGGCAAAAAATACTCTGCAAATGACAATGATGATCTATGCGTTGTTTGTTGGGATGGTGGAAATCTGTTGCTTTGTGATGGATGCCCGAGAGCATTTCATAAAGAATGTGCATCTCTATCGAGTATTCCACGTGGTGACTGGTACTGTCAATTTTGCCAAAACATGTTCCAGAGGGAAAAGTTTGTCGCATACAATGTTAATGCTTTTGCTGCTGGAAGGGTTGAAGGAGTTGATCCTATTGAGCAAATCACCAAGAGATGCATTCGCATAGTCAAAGACATTGATGCTGAGCTTAGTGGGTGTGCTTTATGCAGGGGTGTTGACTTCAGTAGATCTGGCTTTGGTCCACGCACAATAATACTTTGTGATCAGTGTGAAAAGGAGTATCATATTGGCTGTTTGAGGGATCACAAGATGGCATTTCTAAAGGAATTGCCGAAAGGTAACTGGCTTTGTTGCAATGATTGCACGAGAATACATTCCACTTTGGAGAATGTTTTAGTTAGAGGGGATGAGAGACTCCCTGAATCTCTATTGGCTGTTATAAAGAAAAAGCAAGAGGTAAAAGGATTGGATCCCATGAATGATATCGATGTGAAATGGAGGCTTCTTAGTGGAAAAAACGCTTCTCCTGAAACTAGACCATTGCTTTTGGAGGCTATCTCTATCTTTCATGAATGCTTTGATCCTATAGTTGATGCAGCTAGCGGACGCGACCTTATTCGAGCAATGGTTTATGGAAAGAGTGTGCGGGGTCAAGAGTTTGGAGGAATGTATTGTGCATTACTAATAGTCAATTCATCTGTGGTATCTGCGGGCATGCTTCGAATCTTCGGCACTGAAATTGCTGAACTTCCTATAGTTGCAACAAGTAACAGTCACCATGGGAAGGGCTACTTCCAAACACTATCGTCCTGCATTGAGAGGCTATTGGCTTTCATGAAAGTAAAGAACCTTGTGCTACCAGCCGCAGAAGAAGCACAGTCCATTTGGACAGATAAATTTGGGTTTAGCAAGATTAAACCAGACCAGCTTGCCAACTACAGAAGGAACTGCAATCAGTTTGTGACATTCCAAGGGACAAATATGCTTCATAAAACGGTGCCTCCTTGTCGAATCATCAATACTCATCCTTGA 2943 0.4176 MEASVKPESESTTVSLDQSHDERKNSTVNGCIVYTRVKRSLNSCNGFSEDLDSKRFKENAEVPLEFENGIDCCTGSRDGELKSEQVPVTTFKRITRSAMKAKVESGEETVTVLEQQGDAVGAVDIDNGDDKMPVRNFKRITRSAMKEKVESGEDKGNVIEQHGADVANGKGDGKVSVSVRVTRSAMKVKVESGEDKDKVTELEQHGAAVASGEVDRTFKRVTRSAALKADEEIVTELEQDTSVVASEVDGALPALRNKMELKMSKKIVVNKKPKTVKELFRTGLLDGISVVYIRGITKAPGLKGVIRDGGILCSCCLCNGRKVIPPSQFEIHACKQYKRAVEYICLENGKSLLDLLRACRGAPLHALLATIQNFVCSTPVEKYFTCKMCKGCFPSCMKRVGPICCSCVESSKSEETAKNVVGKRIRSPRPVLASKSSCASELSIFSKSKIHKKKRTKSSIRFSSSNSSKSASVPILPQKKIMPKMKKKSSSVKLKTTSNSNCLSPQNKCQWKITKKDHRLHRLVFEENGLPDGTEVAYYAGGQKLLEGFKRGSGIVCRCCNTEISPSQFEVHAGWASRKKPYAYIYTSNGVSLHELSISLSKGKKYSANDNDDLCVVCWDGGNLLLCDGCPRAFHKECASLSSIPRGDWYCQFCQNMFQREKFVAYNVNAFAAGRVEGVDPIEQITKRCIRIVKDIDAELSGCALCRGVDFSRSGFGPRTIILCDQCEKEYHIGCLRDHKMAFLKELPKGNWLCCNDCTRIHSTLENVLVRGDERLPESLLAVIKKKQEVKGLDPMNDIDVKWRLLSGKNASPETRPLLLEAISIFHECFDPIVDAASGRDLIRAMVYGKSVRGQEFGGMYCALLIVNSSVVSAGMLRIFGTEIAELPIVATSNSHHGKGYFQTLSSCIERLLAFMKVKNLVLPAAEEAQSIWTDKFGFSKIKPDQLANYRRNCNQFVTFQGTNMLHKTVPPCRIINTHP 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03940 980 CDD PHD1_AIRE 614 654 - -
Tsu07g03940 980 SUPERFAMILY FYVE/PHD zinc finger 693 756 IPR011011 -
Tsu07g03940 980 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 699 761 IPR013083 -
Tsu07g03940 980 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 858 943 IPR016181 -
Tsu07g03940 980 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 600 692 IPR013083 -
Tsu07g03940 980 ProSiteProfiles Zinc finger PHD-type profile. 612 657 IPR019787 -
Tsu07g03940 980 MobiDBLite consensus disorder prediction 455 474 - -
Tsu07g03940 980 ProSitePatterns Zinc finger PHD-type signature. 615 654 IPR019786 -
Tsu07g03940 980 PANTHER AUTOIMMUNE REGULATOR 11 976 - -
Tsu07g03940 980 Pfam Tify domain binding domain 549 596 IPR032308 -
Tsu07g03940 980 Pfam Tify domain binding domain 304 359 IPR032308 -
Tsu07g03940 980 SUPERFAMILY FYVE/PHD zinc finger 605 660 IPR011011 -
Tsu07g03940 980 MobiDBLite consensus disorder prediction 1 24 - -
Tsu07g03940 980 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 11 976 - -
Tsu07g03940 980 SMART PHD_3 702 759 IPR001965 -
Tsu07g03940 980 SMART PHD_3 614 655 IPR001965 -
Tsu07g03940 980 MobiDBLite consensus disorder prediction 460 474 - -
Tsu07g03940 980 Pfam PHD-finger 615 656 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03940 Tsu-Chr7 45505627 45515133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03940 265 977 PHD Transcription Factor Family AT2G36720 53.022 0.0 784
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tsu07g03940 TDBD 1.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03940 - - cam:101512705 1499.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03940 07 45505627 45515133 Tsu01g02320 01 24773618 24782312 PCT