Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03939 ATGAGATTCAACAGATACAGAACCCTCTTTTGGCTTTCCGGCTTTGTCATCTTTCTCTTTTCTATCATTATTGTTCATTACACCACACCACTTTCCAACACCTCTAACACTTCCATTAGTAGTTCTCCAAGTATTTTTGGTTTTCAACTTGGCATATTGAGCAAGATTATAAAGCTAAGTGGTGCTCaagattttgtttctttgttgaaAACAAATATTGCTAGTAGGAGACATCATCATCATAGGAAGAGTCATAAGGAAAAATGTGATAAGGCCAAATGGGATTCCAAGCTAATTTTAGACTATAATGCGACCGTTTTTACGGTCGATTTAAAGGGTTGTGCTAACTTTACTAGTGTGCAGAAAGCGATTGATGCTGTTCCTGAATCGAGCTCTAATGTCACTCGTATCATAATCAATTCTGGTACATACAGAGAGAAGGTAGTGGTCCAAGCCaacaaaacaaacttaataCTACAAGGTCAAGGGTATCTTAATACAATTATAGAATGGAATGACACTGCAAATTCCACTGGCGGAACTTCCTATAGCTACTCATTTGCAGTTTTTGCTTCTAAGTTCACAGCTTATAACATTAGCTTTAAGAACACTGCACCTCCACCATCACCGGGAGAGGTTGGGGCACAGGCCGTGGCACTGAGAGTTACTGGCGATCAATCGGCATTCTATGGATGTGGATTTTATGGCGCGCAGGACACACTCAACGATGACAATGGGAGACATTATTTTAAGGAATGTTTCATCCAAGGATCCATTGATTTCATATTTGGAAATGCTAGATCGCTTTATGAGGATTGTACTATAAACTCTATAGCAAAACAAGATTTGGTTGGCATTGGTGGATCAATCACAGCTCAAGGACGACAATCTTTGAAGGAACAAACAGGTTTTTCCTTTGTGAATTGCAACATTGTTGGAAGTGGAAAAGTGTGGCTTGGAAGAGCTTGGGGAGCATTTGCCACAGTCATTTTTTCAACAACAAACATGTCTGATGTCATAGCTGCTGAGGGATGGAATGATTGGAGAGATCCATCTAGAGATCAGAGTGTCTTCTTTGGGGAGTACCATTGTATAGGAGTTGGAGCAAATTATACATCTAGAGTCTCTTATGCAAGACAACTCAGGGATTATGAAGCAATCTCATATATAAATGTTTCATACATTGATGGGAATGATTGGCTACTTAATTATAATTAG 1218 0.3834 MRFNRYRTLFWLSGFVIFLFSIIIVHYTTPLSNTSNTSISSSPSIFGFQLGILSKIIKLSGAQDFVSLLKTNIASRRHHHHRKSHKEKCDKAKWDSKLILDYNATVFTVDLKGCANFTSVQKAIDAVPESSSNVTRIIINSGTYREKVVVQANKTNLILQGQGYLNTIIEWNDTANSTGGTSYSYSFAVFASKFTAYNISFKNTAPPPSPGEVGAQAVALRVTGDQSAFYGCGFYGAQDTLNDDNGRHYFKECFIQGSIDFIFGNARSLYEDCTINSIAKQDLVGIGGSITAQGRQSLKEQTGFSFVNCNIVGSGKVWLGRAWGAFATVIFSTTNMSDVIAAEGWNDWRDPSRDQSVFFGEYHCIGVGANYTSRVSYARQLRDYEAISYINVSYIDGNDWLLNYN 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03939 405 SUPERFAMILY Pectin lyase-like 104 401 IPR011050 -
Tsu07g03939 405 ProSitePatterns Pectinesterase signature 2. 255 264 IPR033131 -
Tsu07g03939 405 Pfam Pectinesterase 109 398 IPR000070 GO:0030599|GO:0042545
Tsu07g03939 405 Gene3D - 102 405 IPR012334 -
Tsu07g03939 405 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 12 403 - -
Tsu07g03939 405 PANTHER PECTINESTERASE 14-RELATED 12 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03939 Tsu-Chr7 45502582 45505024 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03939 100 401 Carbohydrate Esterase AT1G05310 56.863 1.22e-121 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03939 - - gmx:100802034 655.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03939 07 45502582 45505024 Tsu01g03700 01 44751379 44754101 PCT