Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03920 ATGGAATCTCACCACGTTGATGTCTCTCCATCCGAAACCGGTTTTCAACATTACGGgtgTTCGCATTATAAAAGGAGATGCAAAATCATAGCACCTTGTTGCAATGAAATTTTCGATTGCAGACATTGTCATAACGAATCCAAGAATTCTATTCACGTTGATCCTGCTAACAGGCACGACATTCCTCGCCATGATGTTAAGAGGGTCATCTGTTCCTTGTGTAGCACTGAGCAAGATGTTCAACAGGTTTGCATTCAATGTGGTGTTTGCATGGGTAGATACTTCTGCTCCAAATGCAAGTTTTTCGACGACGATGTATCAAAAAAGCAATACCATTGCAATGAATGTGGCATATGCAGAACTGGAGGTGAAGAGAACTTTTTCCATTGCAAAAAATGTGAATGTTGCTATTCATCGTCGATGAAGGATTCACACCATTGTATTGAAAAAGCAATGCATCACAATTGCCCAGTTTGCTTTGAGTTTCTTTTCGATACAACGAAAGATATCACTGTATTGCCATGTGGTCACACCATACATTTGGGATGCGTGAGAGAAATGCAACAACATGCCCAGTTAATGTTACACACGATTAAAGGCTCTTCAATCAATATATGCatgttgaaaatgtcttctctATCGTTATTTGAATATTCATAA 660 0.3788 MESHHVDVSPSETGFQHYGCSHYKRRCKIIAPCCNEIFDCRHCHNESKNSIHVDPANRHDIPRHDVKRVICSLCSTEQDVQQVCIQCGVCMGRYFCSKCKFFDDDVSKKQYHCNECGICRTGGEENFFHCKKCECCYSSSMKDSHHCIEKAMHHNCPVCFEFLFDTTKDITVLPCGHTIHLGCVREMQQHAQLMLHTIKGSSINICMLKMSSLSLFEYS 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03920 219 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RZFP34 3 194 - -
Tsu07g03920 219 SUPERFAMILY CHY zinc finger-like 16 91 IPR037274 GO:0008270
Tsu07g03920 219 SUPERFAMILY Zinc hairpin stack 92 149 IPR037275 -
Tsu07g03920 219 Pfam RING-type zinc-finger 156 189 IPR027370 -
Tsu07g03920 219 ProSiteProfiles Zinc finger CTCHY-type profile. 91 155 IPR017921 -
Tsu07g03920 219 SMART ring_2 156 209 IPR001841 -
Tsu07g03920 219 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 3 194 - -
Tsu07g03920 219 SUPERFAMILY RING/U-box 154 190 - -
Tsu07g03920 219 Pfam CHY zinc finger 20 101 IPR008913 GO:0008270
Tsu07g03920 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 197 IPR013083 -
Tsu07g03920 219 ProSiteProfiles Zinc finger CHY-type profile. 13 89 IPR008913 GO:0008270
Tsu07g03920 219 ProSiteProfiles Zinc finger RING-type profile. 156 206 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03920 Tsu-Chr7 45328041 45331500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03920 16 185 C2H2 Transcription Factor Family AT3G18290 39.429 8.35e-35 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03920 K10144 - qsu:112001041 350.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03920 07 45328041 45331500 Tsu07g03920 07 45328041 45331500 ECH