Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03916 atGTTTCAAACAAAATGCATTTTGCTAATTATCTTTGTTCTAAGTTCATTTTCACCATTTGGAAAAGCAATGCTGAACTTAACTCTTCCTGGAACACATCCTGACCCTGAAGCTGTTGCTCATGAAGTTCATAGGAAGGTGAATGCTTCGATGGCAAGAAGGGAAATGCTATCTTCTGGATCAGCATGCATGACAGGAAACCCGATCGACGATTGTTGGAAATGCGACCCAGAATGGCCAAACAATCGACAAAGATTAGCAGATTGTGCAATTGGGTTTGGTCAGTATGCTAAAGGAGGAAAAGGTGGTGAATATTATGTTGTAACAGATTCCTCAGACGATGATCCTGTTACCCCAAAACCTGGTACATTAAGATATGCTGTGATAAAAAATGAACCATTGTGGATAGTGTTTCCTAGTAACATGTTGATTAAGCTGAAGcaagaattgatttttaataGTTATAAAACTATTGATGGACGTGGTGCCGATGTTCATATTGTTGGAGGAGGGTGCATTACTTTGCAGTTTATAAGTAATGTTATTATACATAACATTCATATTCATCACTGTCATCCCTCAGGAAACACAAATGTGCGATCAAGTCCAGAACACTACGGCTACAGAACAATGTCGGACGGAGACGGAATATCCATCTTCGGTTCAAAAGACATATGGATTGACCATTGCACGCTCTCACGTTGCAAAGACGGACTAATAGACGCAGTAATGGGATCCACAGGGATAACAATATCTAACAACTTTATGTCACACCACAACGAAGTCATGCTCCTCGGACACAGCGACGACTACCTCCCTGACTCGGGAATGCAAGTCACAATCGCATTCAACCATTTCGGTCAGGAGCTCGTTCAGAGGATGCCGCGCTGCAGAAGAGGATACATCCATGTGGTCAACAATGATTATACGCAGTGGGAGATGTATGCCATCGGTGGGAGTGGAGAACCAACTATTAATAGTCAAGGAAATCGTTACGCTGCGCCGGTTAATCTTTTTGCCAAAGAGGTTACTAAGAGGGTTGAAACAGAACAAAATAAGTGGAAAGGGTGGAATTGGAGGTCTGAAGGTGATGTTATGATTAATGGTGCCTTTTTTGTTACTTCTGGTGAAAGTCTAGAGGTTAAGTATGAGAAGGCTTTTAGTGTTGAACCTCAATCTGCTAATCGGATTGTTCTTCTTACCATGAACTCTGGTGTTCTTGGCAATGCAAGGGACAATAACCTGGGGATGTGGAGCAGAGGACCAAGTAGCAATGGTGACGGCATTTTGGATTCTGGCCCGGATTACACAGATGATATGTCGGACAGTGTGCGAGTGTTGCCGTCTTCTTTTACTATGCTGACGGGGGTCTTGTTGTCTTTTAGGGTGATACTGTTAACGTTTATTCAATGA 1413 0.4211 MFQTKCILLIIFVLSSFSPFGKAMLNLTLPGTHPDPEAVAHEVHRKVNASMARREMLSSGSACMTGNPIDDCWKCDPEWPNNRQRLADCAIGFGQYAKGGKGGEYYVVTDSSDDDPVTPKPGTLRYAVIKNEPLWIVFPSNMLIKLKQELIFNSYKTIDGRGADVHIVGGGCITLQFISNVIIHNIHIHHCHPSGNTNVRSSPEHYGYRTMSDGDGISIFGSKDIWIDHCTLSRCKDGLIDAVMGSTGITISNNFMSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGQELVQRMPRCRRGYIHVVNNDYTQWEMYAIGGSGEPTINSQGNRYAAPVNLFAKEVTKRVETEQNKWKGWNWRSEGDVMINGAFFVTSGESLEVKYEKAFSVEPQSANRIVLLTMNSGVLGNARDNNLGMWSRGPSSNGDGILDSGPDYTDDMSDSVRVLPSSFTMLTGVLLSFRVILLTFIQ 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03916 470 PRINTS Pollen allergen Amb family signature 386 409 IPR018082 -
Tsu07g03916 470 PRINTS Pollen allergen Amb family signature 149 165 IPR018082 -
Tsu07g03916 470 PRINTS Pollen allergen Amb family signature 213 234 IPR018082 -
Tsu07g03916 470 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Tsu07g03916 470 PRINTS Pollen allergen Amb family signature 293 312 IPR018082 -
Tsu07g03916 470 PRINTS Pollen allergen Amb family signature 89 106 IPR018082 -
Tsu07g03916 470 PRINTS Pollen allergen Amb family signature 113 138 IPR018082 -
Tsu07g03916 470 PRINTS Pollen allergen Amb family signature 357 381 IPR018082 -
Tsu07g03916 470 SUPERFAMILY Pectin lyase-like 67 396 IPR011050 -
Tsu07g03916 470 SMART amb_all 141 338 IPR002022 -
Tsu07g03916 470 Pfam Pectate lyase 147 326 IPR002022 -
Tsu07g03916 470 Gene3D - 66 408 IPR012334 -
Tsu07g03916 470 PANTHER PECTATE LYASE 12-RELATED 3 424 - -
Tsu07g03916 470 PANTHER PECTATE LYASE 18-RELATED 3 424 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03916 Tsu-Chr7 45299991 45304055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03916 1 470 Polysaccharide Lyase AT3G53190 70.981 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03916 K01728 - gmx:100775595 797.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03916 07 45299991 45304055 Tsu07g03916 07 45299991 45304055 ECH
Tsu07g03916 07 45299991 45304055 Tsu01g02342 01 25137772 25144427 PCT