Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03902 ATGGGGAGAGCTCCTTGCTGTGACAAGGCTAATGTAAAGAAAGGTCCATGGTCTCCTGAAGAAGATGCAAAACTAAAGGATTACATAGAGAAACATGGAACTGGAGGCAATTGGATTACTCTTCCAAAAAGAGTTGGTTTGACAAGGTGTGGAAAAAGCTGTAGACTAAGATGGCTTAATTATCTTAGACCAAACATTAAACATGGTGAATTCTCTGACTCAGAAGATAAAATAATATGCACCCTTTTTGCTAGCATTGGAAGCAGGTGGTCAATAATAGCATCTAAGTTACAAGGCAGAACTGACAATGATGTAAAGAATTACTGGAACACCAAacttaagaaaaaatttatgttcACAAATCATTCAATGGAGATGAAATCTCAACAAGTTAATCTTTTATCCATCCTTCAaagttcaacatcaacatcTCAATCATTATCATtcacaaacaacaaaaacagtTCATACTATCATCACTCCAATGGTTCTTTCACAAGTTCCTTTTCCAACTCATCAACTTCATCAAGTCTTTTGAGTGGAAACTCTTCTACTTCAGCAGCACAAGAAAGTTTCATTGGTTCATCACAGAAATGTCAATTCAATGAAAAGTGTGGTGAAGGTGATGCAACTTTTGTAGAGCATGGTGATGTTAGTTATATCTACAATGAGGTTGAAGATAGTGAGAAGTTGATGTTTTCTAATGGTGGTAATGTTAATGGATTTTGGGGAGAAAATCCATTGGATTATGGTGTAGATGAAATTAAAGAGCTAATAAGCACAACTTCTACTAGTAGTTGCAACAAGTTTTTGTTTGATGAGTAA 825 0.3333 MGRAPCCDKANVKKGPWSPEEDAKLKDYIEKHGTGGNWITLPKRVGLTRCGKSCRLRWLNYLRPNIKHGEFSDSEDKIICTLFASIGSRWSIIASKLQGRTDNDVKNYWNTKLKKKFMFTNHSMEMKSQQVNLLSILQSSTSTSQSLSFTNNKNSSYYHHSNGSFTSSFSNSSTSSSLLSGNSSTSAAQESFIGSSQKCQFNEKCGEGDATFVEHGDVSYIYNEVEDSEKLMFSNGGNVNGFWGENPLDYGVDEIKELISTTSTSSCNKFLFDE 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03902 274 SMART sant 13 64 IPR001005 -
Tsu07g03902 274 SMART sant 67 115 IPR001005 -
Tsu07g03902 274 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Tsu07g03902 274 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Tsu07g03902 274 PANTHER TRANSCRIPTION FACTOR RAX3 1 267 - -
Tsu07g03902 274 CDD SANT 16 62 IPR001005 -
Tsu07g03902 274 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Tsu07g03902 274 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Tsu07g03902 274 Gene3D - 7 68 - -
Tsu07g03902 274 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Tsu07g03902 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Tsu07g03902 274 CDD SANT 70 113 IPR001005 -
Tsu07g03902 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Tsu07g03902 274 PANTHER OS09G0431300 PROTEIN 1 267 - -
Tsu07g03902 274 Gene3D - 70 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03902 Tsu-Chr7 45176651 45178224 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03902 1 124 MYB Transcription Factor Family AT5G57620 78.226 9.18e-74 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu07g03902 Myb_DNA-binding 4.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03902 K09422 - gmx:778084 307.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03902 07 45176651 45178224 Tsu07g03902 07 45176651 45178224 ECH