Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03900 ATGTCAAAAGAATCTGAAGAAATTAAAACTAGTACTGAGCAATGGAAATGGTCTGAAATGCAAGGTCTTGAGCTTGTTAATGATGATAACAATTCTGACCCTTTTAAAGGGAACCTACCAACAGTAATAGAAGAGGGTGTTTCTCAAAATCAAGTTCAAGTTTCAATGGTGGAAACATCAGAAACTAACAAAGATGGTGGTAGTGGAAAAGAGGAGAAGGTTAAGAGTGTTCCTGCTGTTGGATTTGGAGAGTTATTCAGATTTGCTGATGGGTTGGATTATATTCTAATGACTATTGGAACTGTTGGAGCAATTGTTCATGGTTGTTCTTTGCCTATTTTTCTTAGATTCTTTGCTGATCTTGTTAACTCTTTTGGTTCCAATGCTAATAATTTGGATAAGATGACACAAGAAGTTGTTAAGTATGCATTTTACTTCCTTGTGGTGGGTGCTGCTATTTGGGCATCTTCGTGGGCAGAGATTTCGTGTTGGATGTGGACCGGAGAGCGTCAATCAACTAAAATGAGGATCAAGTATCTGGAAGCTGCATTGAAACAAGACATTGAATTCTTCGACACTGAAGTTCGGACTTCCGATGTTGTTTTTGCAATCAACACTGATGCTGTGATGGTTCAGGATGCAATTAGTGAGAAGTTGGGAAATTTCATTCACTATATGGCTACTTTTGTTTCTGGTTTTGTTGTTGGATTCACTGCTGTTTGGCAATTGGCTTTGGTTACCCTTGCTGTTGTTCCTATGATAGCTGTTATTGGAGCCATTCACACCACTACTTTAGCTAAGCTCTCTAGTAAAAGCCAAGAAGCTCTTTCTCAAGCTGGCAACATTGTGGAACAGACGGTTGTGCAAATCCGTGTAGTGTTGGCTTTCGTTGGTGAGTCCCGAGCACTACAAGGCTACTCATCAGCCTTGAAGGTTGCTCAGAAGCTTGGCTACAAAACAGGATTAGCAAAGGGAATGGGATTAGGTGCAACTTACTTTGTTGTTTTCTGTTGCTACGCGCTTCTGTTGTGGTATGGAGGCTATCTTGTAAGGCATCACGAGACCAACGGAGGACTTGCCATTGCAACCATGTTTGCTGTCATGATTGGTGGAATAGGTTTGGGGCAATCTGCACCTAGCATGGCTGCATTTACAAAGGCGAGGGTTGCTGCGGCTAAGATTTTCCGCATAATCGATCACAATCCTGGTATAGATAGAAACAGTGAATCGGGATTGGAATTGGAGACAGTTACTGGACTTGTGGAACTTAAAAATATCGACTTTTCTTATCCATCTAGGCCTGAGGTTCTGATCCTCAATGATTTCTCCTTGAGTGTTCCTGCTGGAAAGACCATAGCTTTAGTTGGTAGCAGTGGCTCCGGCAAGAGCACTGTTGTTTCCCTTATTGAGAGATTCTATGACCCAACTTCAgGACAAGTTACGCTAGATGGTAATGACATTAAAACTTTGAAGCTTAAATGGTTGAGGCAACAAATAGGACTAGTGAGTCAAGAGCCTGCTTTGTTCGCTACCACGATTCGAGAAAATATACTCTTGGGAAGGCCTGATGCAGACCAGGTTGAGATTGAAGAAGCTGCTAGGGTTGCTAATGCTCATTCGTTCATCATCAAACTTCCTGAAGGCTATGAAACTCAGgTAGGAGAAAGAGGGTTACAACTTTCTGGAGGGCAAAAGCAAAGAATAGCAATAGCAAGGGCGATGCTAAAAAATCCAGCAATTCTTCTACTAGATGAGGCAACAAGTGCATTGGACTCTGAATCGGAAAAACTGGTGCAAGAAGCACTTGACCGGTTCATGATTGGAAGAACGACTCTTGTAATTGCTCATCGGCTCTCCACAATTCGCAAAGCTGACCTCGTAGCTGTGATTCAACAAGGaagtgtttttgaaattggaacTCATGATGAGCTCTTCGCCAAAGGTGAAAATGGAGTCTATGCCAAGCTTATTAAGATGCAGGAGGTTGCCCATGAAACTGCTATGAATAATGCTAGAAAGAGTAGTGCAAGgccttcaagtgcaagaaactCGGTTAGCTCGCCGATAATTGCTAGGAATTCTTCTTATGGACGATCACCATACTCACGTAGATTGTCTGATTTCTCTACATCCGATTTTAGTTTGTCCCTTGATGCATCATATCCAAATTACAAGCATGAAAAGCTTGCCTTCAAAGATCAAGCCGGTTCCTTCTGGAGACTAGTAAAAATGAACTCTCCTGAATGGCTCTATGCTTTAATTGGTTCAATCGGTTCAATTGTTTGTGGATCGCTTAGTGCCTTCTTTGCTTATGTTCTTAGTGCTGTCCTCAGTGTCTATTACAATCCGGACCACAAACACATGATCCGAGAAATAGACAAGTACTGCTACTTGTTGATTGGTCTTTCATCAACTGCACTTATCTTCAACACGTTGCAACACTTCTTCTGGGATATTGTCGGGGAAAATCTTACGAAACGTGTGAGGGAGAAAATGCTGACTGCGGTGCTTAAGAACGAAATGGCATGGTTTGATcaggaggaaaatgagagtgcTAGGATTTCTGCAAGGCTGGCTCTTGATGCCAATAATGTCAGATCAGCCATTGGAGACCGAATTTCAGTCATTGTGCAGAATACTGCACTTATGCTTGTTGCTTGTACTGCAGGTTTTGTGTTGCAGTGGCGTCTCGCTCTTGTCCTCATTGCTGTATTCCCTGTTGTTGTTGCAGCCACTGTTTTGCAGAAAATGTTCATGACTGGTTTCTCTGGTGACCTAGAAGCTGCTCATGCCAAGGCCACACAATTAGCAGGGGAGGCTATAGCCAATGTTAGAACTGTTGCAGCCTTCAATTCAGAATCGAAAATTGTTCACCTTTTTGCTTCCAACCTTGAAACTCCACTACAAAGGTGCTTTTGGAAGGGACAGATTTCCGGAAGCGGATATGGAATAGCTCAGTTTGCACTTTATGCTTCTTATGCACTCGGTCTTTGGTACGCTTCTTGGCTAGTGAAACATGGAATATCCGACTTCTCTAAAACAATCCGAGTTTTCATGGTCCTCATGGTCTCTGCAAATGGTGCTGCTGAGACTTTAACACTGGCTCCTGACTTCATCAAGGGAGGTAGAGCCATGAGATCAGTCTTTGATCTCCTCGACCGTCGAACCGAGATTGAACCAGATGATCCAGATGCTACTCCTGTTCCTGACCGTCTCCGCGGTGAAGTTGAACTTAAGCATGTGGACTTCTCTTATCCCACTAGACCAGATATGCCGGTTTTCCGTGACCTTAATCTTCGTATCCGAGCTGGCAAAACTCTTGCCCTTGTTGGACCTAGTGGCTGCGGTAAGAGCTCGGTAATTGCACTTATACAGAGATTCTATGATCCAACGTCTGGCCGGGTAATGATTGATGGAAAAGACATCAGAAAATACAACCTCAAGTCCTTAAGAAGACACATTTCTGTAGTACCTCAAGAGCCATGCCTCTTTGCTACTACTATTTATGAAAACATTGCATATGGCCATGACTCAGCAACAGAAGCCGAGATAATCGAAGCAGCAACACTTGCTAATGCTCACAAGTTCATATCTTCTCTAACGGACGGATACAAAACATTTGTAGGGGAGAGAGGCATTCAACTCTCTGGGGGACAAAAACAAAGAATAGCAGTTGCTCGCGCTTTTTTGAGGAAAGCCGAGCTTATGCTTCTTGACGAGGCAACAAGTGCACTTGATGCTGAGTCAGAGAGGTCTGTTCAAGAGGCTCTAGACCGCGCTTCAACGGGAAAAACAACCATCATTGTTGCACATAGGTTATCAACTATAAGGAATGCAAATGTGATTGCTGTGATTGATGATGGTAAAGTAGCTGAACAAGGTTCACATTCACAGTTGATGAAAAATCACCAGGATGGAATATATGCGCGCATGATTCAATTACAAAGGTTTACACACAACGAGGTAATTGGTATGGCATCTGGttcaacttcttcaacatgA 4002 0.421 MSKESEEIKTSTEQWKWSEMQGLELVNDDNNSDPFKGNLPTVIEEGVSQNQVQVSMVETSETNKDGGSGKEEKVKSVPAVGFGELFRFADGLDYILMTIGTVGAIVHGCSLPIFLRFFADLVNSFGSNANNLDKMTQEVVKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKMRIKYLEAALKQDIEFFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPMIAVIGAIHTTTLAKLSSKSQEALSQAGNIVEQTVVQIRVVLAFVGESRALQGYSSALKVAQKLGYKTGLAKGMGLGATYFVVFCCYALLLWYGGYLVRHHETNGGLAIATMFAVMIGGIGLGQSAPSMAAFTKARVAAAKIFRIIDHNPGIDRNSESGLELETVTGLVELKNIDFSYPSRPEVLILNDFSLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVTLDGNDIKTLKLKWLRQQIGLVSQEPALFATTIRENILLGRPDADQVEIEEAARVANAHSFIIKLPEGYETQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVIQQGSVFEIGTHDELFAKGENGVYAKLIKMQEVAHETAMNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASYPNYKHEKLAFKDQAGSFWRLVKMNSPEWLYALIGSIGSIVCGSLSAFFAYVLSAVLSVYYNPDHKHMIREIDKYCYLLIGLSSTALIFNTLQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESARISARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMTGFSGDLEAAHAKATQLAGEAIANVRTVAAFNSESKIVHLFASNLETPLQRCFWKGQISGSGYGIAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRRTEIEPDDPDATPVPDRLRGEVELKHVDFSYPTRPDMPVFRDLNLRIRAGKTLALVGPSGCGKSSVIALIQRFYDPTSGRVMIDGKDIRKYNLKSLRRHISVVPQEPCLFATTIYENIAYGHDSATEAEIIEAATLANAHKFISSLTDGYKTFVGERGIQLSGGQKQRIAVARAFLRKAELMLLDEATSALDAESERSVQEALDRASTGKTTIIVAHRLSTIRNANVIAVIDDGKVAEQGSHSQLMKNHQDGIYARMIQLQRFTHNEVIGMASGSTSST 1333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03900 1333 Pfam ABC transporter transmembrane region 97 370 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu07g03900 1333 Pfam ABC transporter transmembrane region 754 1023 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu07g03900 1333 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 97 1318 - -
Tsu07g03900 1333 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1076 1312 IPR003439 GO:0005524
Tsu07g03900 1333 Pfam ABC transporter 1095 1243 IPR003439 GO:0005524
Tsu07g03900 1333 SUPERFAMILY ABC transporter transmembrane region 740 1063 IPR036640 GO:0005524|GO:0016021
Tsu07g03900 1333 Pfam ABC transporter 439 588 IPR003439 GO:0005524
Tsu07g03900 1333 Gene3D ABC transporter type 1, transmembrane domain 733 1041 IPR036640 GO:0005524|GO:0016021
Tsu07g03900 1333 SUPERFAMILY ABC transporter transmembrane region 85 402 IPR036640 GO:0005524|GO:0016021
Tsu07g03900 1333 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 412 660 IPR027417 -
Tsu07g03900 1333 Gene3D ABC transporter type 1, transmembrane domain 1042 1317 IPR036640 GO:0005524|GO:0016021
Tsu07g03900 1333 SMART AAA_5 1103 1295 IPR003593 -
Tsu07g03900 1333 SMART AAA_5 448 634 IPR003593 -
Tsu07g03900 1333 ProSitePatterns ABC transporters family signature. 560 574 IPR017871 GO:0005524
Tsu07g03900 1333 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1067 1315 IPR027417 -
Tsu07g03900 1333 CDD ABC_MTABC3_MDL1_MDL2 1076 1315 - -
Tsu07g03900 1333 Gene3D ABC transporter type 1, transmembrane domain 84 673 IPR036640 GO:0005524|GO:0016021
Tsu07g03900 1333 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 421 657 IPR003439 GO:0005524
Tsu07g03900 1333 CDD ABC_MTABC3_MDL1_MDL2 421 660 - -
Tsu07g03900 1333 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 99 386 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu07g03900 1333 CDD ABC_6TM_Pgp_ABCB1_D1_like 97 394 - -
Tsu07g03900 1333 CDD ABC_6TM_Pgp_ABCB1_D2_like 743 1058 - -
Tsu07g03900 1333 ProSitePatterns ABC transporters family signature. 1215 1229 IPR017871 GO:0005524
Tsu07g03900 1333 Gene3D - 411 661 IPR027417 -
Tsu07g03900 1333 Gene3D - 1065 1316 IPR027417 -
Tsu07g03900 1333 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 97 1318 IPR039421 -
Tsu07g03900 1333 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 753 1040 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03900 Tsu-Chr7 45133589 45140147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03900 99 677 Calmodulin-binding Proteins AT2G36910 39.243 1.94e-118 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03900 K05658 - gmx:100814667 2305.79