Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03885 ATGGCACGTTATACATTGCTTCATGATCAAGCAAACACATCTATATGTTACATTGGAAATGAATGGAATGAAGATGAAGACCTTGTTGATAAAGGTGATTCTGCAGCACCTGCATTTTATACACAAGAAATTTACGAAGAGCTTCAAGGTCTTACTACCACTTTAACAAAAGATATCAAGGAAGATTTAGGTTTCTGCATAAAGGATGTGAATAAAGATTGGGAGGAAGCCTTTAATTTTAATGGAAAGTTGGATTTTGTGGATGGTTGTGTTAAGCAaaaagGTGATTTTAGAAATAGAATGTGTACAACTGCTGAAATAAGGTACTACTTTCAGAGTTTTTTCCTAGAAGGAGGCTCGTCTGCAGGTTACGTACAACCTAACATAAATTGCAACTTAACTTCATGGGTTTCTGGTTGCGAACCTGGTTGGAGTTGTAGTGCCGATGACAAAATTGACCTTACAAAGGATATAAAAGATGTTCCTTCGAGAATTAAAGAATGTCAACCTTGTTGTGAAGGGTTTTTCTGTCCTCAGGGATTAACTTGCATGATAACATGTCCACTTGGTTCTTATTGTCCACTTGCAACACTGAATCAAGAAACCGGAGTATGTGAACCATATAGTTACCAAATTCCTACAGGAGAAACAGACCATACTTGTGGCAGTGCTGATGTTTGGTCTGGTGTTGTTAACAATAGTGACATCTTCTGTTCTCCAGGATCGTATTGTCCATCTCCTACACACAAAGTTTCTTGTGATAAAGGATATTACTGCAGGACGGGTTCAACTCATCAAAATCGATGCTCCAGGTTGAGTAGCTGTAATCCAAACACGACAACTCAAAACATGCGTGCTTATGCTGCATTGATGATTGTTGCTATGAGTACTCTTCTGATCTTCATTTATAACTTTTCTGATCAAGTGCTAGCTACAAGAGAAAGAAGGAAGGCTAAATCAAGAGAAGCTGCAGCGAAACATGTAAGAGAACACGTACAAGCTCGCGAAAGATGGAAAATAGCTAAAGATTTGGCCAAGAAAAGTTCAACGGGATTGCAAAAGCAGTTGTCTCGAACCTTTTCGCGCAAGAAATCCAGTAAGCAAGGAGACCTATTTCCTCCAACGCTTCCGGATTCATCAAGCAACCCTGAGCAACCATCAAAACCCAAAAAGGAGCCTAGCAATCTTACTAAAATGATGAATTCCATTGAGGCTGATGAACATGAAGGATTTGATTTTCAGATTGGTGACAAGAACATTAAAAAGCAAATGCCAAAGGGAAAAAATTTACACACTCATAGCCAAATTTTAAGGTATGCTTATGGTCAGATTGAGAAGGAGAAAGCTCAGCAAGAACAAAACAAGAACATGACATTCTCAGGAGTAATTTCAATGGCTGCTGAAGGTGGGGAAGTAATCACAAGACCTCCTATTGAGGTAGCTTTCAATAATCTAACCCTCACTTTGAAGGGTAAAAACAAACATGTATTGAGGTGTGTGAGTGGTAAAATCATGCCTGGTCGAGTTTCGGCTGTTATGGGACCCTCAGGAGCCGGAAAAACCACATTTCTTTCAGCTTTGGCAGGAAAAGCAAGAGGCTGCAATGTCTCAGGCTCAATTCTAATTAATGGAAAAAATGAATCCATTCACTCCTATAAGAAAATTACCGGTTTTGTGCCACAAGATGATATTGTGCATGGTAACTTGACAGTAGAGGAAAATCTTCGTTTCAGTGCAAGATGCAGGCTCCCAGCAGACATGCCAAAACCAGATAAGGTTCTGATTGTTGAACGAGTGATTGAGTCCTTAGGACTACAGCCAGTAAGGGATTCTCTAGTTGGGACAGTAGAGAAGAGAGGCATATCTGGAGGGCAAAAAAAACGTGTAAATGTAGGACTAGAGATGGTGATGGAACCTTCATTATTAATCTTAGATGAGCCTACAACTGGTTTGGATAGCGCATCTTCTAGTTTACTTCTTAAAGCACTTCGCCGTGAAGCTCTTGAAGGTGTAAACATATGCATGGTACTTCACCAACCAAGTTATACCTTGTTTAGAATGTTTGATGATATAGTATTTCTAGCAAAAGGCGGTCTTACAGCATATCATGGTCCAGTGAAACAAGTAGAAGAATACTTTGCTGGAATTGGAATCCCAGTACCTGATCGCGTAAATCCTCCTGACCATTTCATCGATATTCTTGAAGGTTTAGAGAAACCAACTTCAGGTGTAACTGTTGAAACACTTCCGGTTAGATGGATGCTTCATAATGGATATCCAGTACCACCAGATATGCTTCATTTGGCCGATAAAATTGCTGCTCCTGCATCTGATGCCGCAAGTGTAACTAGACAGACCTCAAAGGGCACCGATGAAACATCTGATCTATCCTTTTTTGTAGAGCTTTGGGAGGATTTGGTGAGCAATATTAGGACCCAAAAAGATCATATAGAAGCAATCTTCTTAAGAACAAAGGACTTATCTAACCGAAAGACTCCTAATGTAGCTCTACAATATAGATACTTCCTTGGCCGGGTTGGCAAACAGCAGCTTAGAGAAGCAAACTTACAGGCAGTCGACTATCTCCTTTTATTGGTTGCCGGAGCTATCTTAGGAACACTTACTAAAGTAAATGATGAAACATTTGGTTCCCTTGGTTATACATATACAATCATTTCTGTTTCTCTACTTTGCAAGATTGCAGCTCTAAGATCATTTACTTCAGACAAGTTACAATACTGGAGAGAAAGTGCAGCTGGGATAAGCAGTTTAGCacattttctctcaaaagatacAATTGATCTTTTCAGCACAATCACCAAACCTGTAGTTTATCTATCCATGTTCTATTATTTAAGTAATCCAAGGTCTAGCTTTGAAagtaattatataattttggttTGTTTGGTCTACTGTGTAACCGGCATGGCTTATGCATTAGCCGTCTTCTTCCAGCCTAGTCCTGCTCAGCTGTGTTCAGTGCTTCTTCCTGTTGTTATGACTCTCATTGCCAAACAGAATAGAGATTCTGCATTTATGAAGATTCTAGTACAATTGTGCTATCCAAAATGGGCTTTGGAGGCTTTTATTATTGCAAATGCCGAAAGGTACACTGGAGTATGGTTGATAACTCGTTGTACTTCATTGATGAATAGTGGTTATGATGTCAATCAATGGCATATTTCTCTACTTGTACTCATTTTGAATGGAATAATTGCCCGAATTCTAGCCTTCTTTGGTTTGATAATGTCACAAAAGAGGTGA 3264 0.3897 MARYTLLHDQANTSICYIGNEWNEDEDLVDKGDSAAPAFYTQEIYEELQGLTTTLTKDIKEDLGFCIKDVNKDWEEAFNFNGKLDFVDGCVKQKGDFRNRMCTTAEIRYYFQSFFLEGGSSAGYVQPNINCNLTSWVSGCEPGWSCSADDKIDLTKDIKDVPSRIKECQPCCEGFFCPQGLTCMITCPLGSYCPLATLNQETGVCEPYSYQIPTGETDHTCGSADVWSGVVNNSDIFCSPGSYCPSPTHKVSCDKGYYCRTGSTHQNRCSRLSSCNPNTTTQNMRAYAALMIVAMSTLLIFIYNFSDQVLATRERRKAKSREAAAKHVREHVQARERWKIAKDLAKKSSTGLQKQLSRTFSRKKSSKQGDLFPPTLPDSSSNPEQPSKPKKEPSNLTKMMNSIEADEHEGFDFQIGDKNIKKQMPKGKNLHTHSQILRYAYGQIEKEKAQQEQNKNMTFSGVISMAAEGGEVITRPPIEVAFNNLTLTLKGKNKHVLRCVSGKIMPGRVSAVMGPSGAGKTTFLSALAGKARGCNVSGSILINGKNESIHSYKKITGFVPQDDIVHGNLTVEENLRFSARCRLPADMPKPDKVLIVERVIESLGLQPVRDSLVGTVEKRGISGGQKKRVNVGLEMVMEPSLLILDEPTTGLDSASSSLLLKALRREALEGVNICMVLHQPSYTLFRMFDDIVFLAKGGLTAYHGPVKQVEEYFAGIGIPVPDRVNPPDHFIDILEGLEKPTSGVTVETLPVRWMLHNGYPVPPDMLHLADKIAAPASDAASVTRQTSKGTDETSDLSFFVELWEDLVSNIRTQKDHIEAIFLRTKDLSNRKTPNVALQYRYFLGRVGKQQLREANLQAVDYLLLLVAGAILGTLTKVNDETFGSLGYTYTIISVSLLCKIAALRSFTSDKLQYWRESAAGISSLAHFLSKDTIDLFSTITKPVVYLSMFYYLSNPRSSFESNYIILVCLVYCVTGMAYALAVFFQPSPAQLCSVLLPVVMTLIAKQNRDSAFMKILVQLCYPKWALEAFIIANAERYTGVWLITRCTSLMNSGYDVNQWHISLLVLILNGIIARILAFFGLIMSQKR 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03885 1087 Pfam ABC transporter 499 648 IPR003439 GO:0005524
Tsu07g03885 1087 SMART AAA_5 506 698 IPR003593 -
Tsu07g03885 1087 ProSitePatterns ABC transporters family signature. 621 635 IPR017871 GO:0005524
Tsu07g03885 1087 Pfam ABC-2 type transporter 678 1086 IPR043926 GO:0140359
Tsu07g03885 1087 CDD ABCG_EPDR 477 704 - -
Tsu07g03885 1087 PANTHER WHITE-BROWN COMPLEX HOMOLOG PROTEIN 30-RELATED 33 1082 - -
Tsu07g03885 1087 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 33 1082 - -
Tsu07g03885 1087 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 480 721 IPR003439 GO:0005524
Tsu07g03885 1087 MobiDBLite consensus disorder prediction 349 395 - -
Tsu07g03885 1087 MobiDBLite consensus disorder prediction 366 395 - -
Tsu07g03885 1087 Gene3D - 475 715 IPR027417 -
Tsu07g03885 1087 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 477 703 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03885 Tsu-Chr7 45005568 45011704 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03885 499 700 Calmodulin-binding Proteins AT2G36910 29.524 3.35e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03885 - - mtr:MTR_7g101780 1828.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03885 07 45005568 45011704 Tsu01g04116 01 49084125 49090826 ECH
Tsu07g03885 07 45005568 45011704 Tsu01g02400 01 25885984 25902483 ECH
Tsu07g03885 07 45005568 45011704 Tsu07g03885 07 45005568 45011704 ECH