Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03881 ATGAAAATTAATCTTAAGGAGGAAGAGACTGTTGTTTGTGAGATGAAAGCTCGGAATCTTGTAGCTGATGATGGAAGACATTCCTATTCAAGGCATGGTAAAGATTTGACTAAAGAATATAAAGATAACACAGGGGTGGATCATCATGGGGAAAATGGAAAAGGTGACGGGGAAGTAGTATGTTGCAAGTGCTTGCATGGAGGAACGCTCTTGTGCTGTTGTGGTAAAGGGTGTAATAGGAGGTATCATCCATCTTGTTTGGATCTTCCTCTCAAATTTATTCCTATAGGGTTTTGGCATTGTATTCGgtgtgtgaagaaaaaaatagaacttGGGGTGCATTCTGTTTCTGAAGGGGTAGAATCCATATGGGATTCCCGAGAAGTGGCTCCAAAAGGTGAAGTGATCCAAAGAGAGTACTTTGTCAAGTATCAGGGCCTCTCTCATGCTCACAACTGTTGGATTCCAGAAAAGCAAATGCTTATTGAGGCTCCAAAGCTTTTGgaaaaatataagaagaaacAACAGGTTGTCAGGTGGAAAAAAGATTGGAGTATACCTCACCGGTTGCTGCTAAAAAGAAAACTTATCTTGTCAAAGCTAAATGCTCACCCTTTTGATGGAAGTGATGACAATGGTTCAGGTTGCCGATATGAATGGCTTGTGAAATGGACTGGTCTTGGTTATGATCATGTTACATGGGAGTTAGACGACGCTATATTTATGACATCACCTAAAGGGATTAAACTCATGGACAATTATGAAAGTCGTCAAAAGAGATCAGATGGGCTGTCAAATCTTCGTGAAGCTAAGGAGGAGAGAAAAGATTCCTTTACCGAATTATCAGAGCTTTCATCAGGAGATTCATCAGGATTGTATAACCAGCATTTGAGTTATGTGAACAAGCTTCACATGTGTTGGTACAAAGGTCAGAGTGCCGTTATTGTTGATGATCAAATTGACCAGGAGCGGGTTAGGAAGatgattttgtttatattatctTTGAATTGCAATGTGAAAAGGCCTTTTCTCATCATCTCAACTTCAACTGGCCTCTCTGCATGGGAAACAGAATTCTTACATTTGGCACCATCTGCCAATCTCGTAGTTTACCAGGGAGATAAAGATGTACGCAGTAGCATCAGATCATTAGAATTTTACAATGAAGATGGTGgtgttttatttcaaatattacTCTCACCATCTGATATTGTCATTGAGGACTTAGATGCACTGAGATGCATTAAATGGGAAGCAATCATAATTGATGAATGCCAGCGGCGACCCAGAATTTTAGGAAACATTGACGATGTCAATATTCTAGGAGCTGAGATAAGGCTCCTTCTCGTTAGTGGACAAATCAAGGAAGATCGAGCTGACTATATGAAACTGCTTTCTTTACTCAAGTCTGGACTTGATGAGTTACATTTCTCATCTGCAAGCATCTCCAATTTAAAGAGTCAATTGGAACAATATATTGCACTTAAGTGCAATTCTGACTCCAGCAGGTTTATAGAGTATTGGGTTCCTGCTCAGCTTTCCAGTTTGCAGCTTGAGCAGTATTGTTCATTGCTGCTTTCAAACTCATTGTCGTTATGCTCAGGCCCAAAGCCTGCCTCCGTTGATGCCCTCGGCGAGCTTATTATCTCAACAAGGAAGTGCTGCAACCATCCTTATCTCCTCGACAAGTCACTGAATAATGTAGTCACTAGAGGTCTGCCTGTTGAAGAACATCTTGATATTGGAATAAAAGCAAGTGGAAAATTGCAACTTCTTGAAAAGATCCTTTTTGAAGCTAAACATCGTGAGCTAAGAGTGATAATATTATTTCAGTCTAGTGGTGGTTCTGGATCAATTGGAGATATTTTGGATGATGTTCTTCTTCAGAGATTTGGAAACGACTGCTATGTCCGATATGGCTGTGGTTACGTTCCTTCTAAAGCTCAAGCTGCTCTGGACACATTTAATGACAGAGAAAGTGGAAAATTCGTTTTCTTGATAGAGAGCCGTGCTTGTCATCCTAGCATTAAGCTGTCATCTGTGGATATTATTATATCCTTTGACAGTGGTTTGGACAtgcaaaatgacataaaatgcTTGCAAAAAATGTCTATCAGCTCAAAGTTAAAAAAGATAACAGTTTTGAGATTGTACTCATGCTTCACTGTTGAAGAAAAGGTTTTAATGCTTGCAAAAGAGGGTATAGCTCTTGTAtccaacaaaagaaagaaagaacttGACAGCAATATGCAGTTAATTAACCAGAGTACATATCACACCCTTCTAAAATGGGGGGCCTCTTATCTGTTCAGTAAGCTTGATGACTTACATGGAAGTGGCACTTCAGTCTCTGCTTCAGACATCTCCAATCAGTCAAATCTAAATGATGTAATCTGTGAATTATCATCGAAACTGGTTTGTGATAGCGGTGGCACTGATTCTCACAGACAGTCATTCATATCGAGAGTAGAGCAGAATGGAGGAGAATATGCAAGGAACATTTCATTGCTAGGAGaaagagaaatgaagaaattgGGCAATGAAACACATACTTTTTCATGGAGTGATCTCCTCAAAGGAAGGAATCCTCACTGGAAGTTTTTATCTGCTTCGTCTCAAAGGAACAGAAAAACAGTTGAATATTTTCATCACACAGTAAAAGGATCTGAAAATGAAAATGGTGCCATtacaagaaagaaaaggaaagagtCCACGGATAGTGTTTATCCCATAGGAAAGAACGCGTCCAAGGATAATATAGATCTTGAGGAGAGGAAAATCACCAAGATAGTTGACCCTAAACGAAGGAAGGTGTCCAAGGAAGTTATTGATTCCAAGGGAAGGAACGTGTCCACGGATGTTGTTGATTCCAAACATCTGAAAAAAAAGTGGAAGAATAAGAAGAGTCGAAGTGCTGATAAAAGCAAAAGCAAATTGAATGGAGCAGATGCAATGACTAAACAAATtccaaaacaaaagaaactgGCGGACATGCCCAAGAGCAATAAACTCCTGTCAAAGCCTGATATATCTATACTCTGTGATGTTCTACACTTTCCGGAAAATGACAAGGTTGTCACCATGAAGATTCTTGAGTATGTATTCGAACATTATGACATTGATTGCCTGGAAGATTCTACAGTGCAGGCATTTGAAATATCTGTGTGTTGGCTAGCAGCTTCTCTGTTGGAACACAAGATTGATAGGAAACATTCACTTGATCTTGCAAAAAGGCACTTGAATTTTAATTGCACGGAGGGAGAAGCCACCGATGTTTACAATTCACTGCAAGAGTGTAAGGAAAACATTTCAAGCTGTTTACAAAATGAACTTTGTGttgaaaaaactaatataaatgGTGCTTCAAGCTCCATGACACCTGAGCTGCAACATTCGGCAGAGGATGAGAATCAAAAGGGTTTTCAGCATCCAAGTGTTTCAAATCTTGTGAAATCTGTCACAAATGAACCCGATCTTCCAAGAAAATCTCCCACAACAGTGCTATTTTCACAAGACCAGATTTATACAGAAAACTTCCATAACGAACCTTATATGGCTCATGAAAGTTCTACATCTCAAACGATCCCTGGTAGTTTGCCTGGGGAAGCAGATGCTATTTCCATGGAATCTGATGCAGATGAGAGAATAAATGCCGTGAACTCGGCAGCAGCTGAAGTTTCACACCTTGAGCACTGGAATATTTCCCCCAATCCAAGTAATGATTTCAATAATGTCAATCCTGTAACGGTTTTGGAAAGACAGAGTCCCATTGTAGGTTCAGATATTATGCAATCTGATATCAGAGTTTTTGAAGATCCTCAAACTTTGAATCAAGTGATTGACATCGACAATTCTATGAATATATCAACTCATCTTGCACAACTTCACAATGTTGAGACAGATACTGTAACTTGTGATAGAATTGCTGTTCCCGAGGTCAGACAGTGGTGCAGTATAGTGAATCCTGTATGTGTTGAGTCAACCACTTCAGAGTTTGCTGAGTGTCCTTTACCATATAGGCAACTATCACATGCAAATTTAATGCAGTTGCCACAGTCGTTGTCGGCTAGTCCATCTTTTATGGAGGACTTATCTCGTACAGTCATGCCACTAGACAGAGTTACAAATCATAATTGTCTTCGTGAGTCTGTAGAAATATTGCAAGGACTGTGTGAACCCGTGGAACTGGTTAACTCTTCACCTGTGATATTGGAACCCTCCAGTTATGCGCCCGGGAATGAAAATGCTTCTCATGATCCTCACAACATTAATAATCCTGGATATATGAACAGTGATCCCTTTCAAGCTCATTATTTGACATCTCAAATGCCCTATGTTGCCGACCCAAACACACTACTATTTGAAATGGAGCGAATACAAAAAATGAATGAAGAAGCTGTCATGACCTATGAGAAAAAAAAATTGCAGCTGCAGTCTGACTATGAAAAGGAGGTTGAAATGTTACGTGCAAAACACTATACATTGCTTCAGAATGTCGATACTGCAGCAGCATTGAAGAAGATTGAACTTGAGGCACACAGAGACATTGTATTCAGGAATATGATATTAGCTGACGTTTGGAGCCGAACTGATAGTATTTGCTAA 4605 0.3833 MKINLKEEETVVCEMKARNLVADDGRHSYSRHGKDLTKEYKDNTGVDHHGENGKGDGEVVCCKCLHGGTLLCCCGKGCNRRYHPSCLDLPLKFIPIGFWHCIRCVKKKIELGVHSVSEGVESIWDSREVAPKGEVIQREYFVKYQGLSHAHNCWIPEKQMLIEAPKLLEKYKKKQQVVRWKKDWSIPHRLLLKRKLILSKLNAHPFDGSDDNGSGCRYEWLVKWTGLGYDHVTWELDDAIFMTSPKGIKLMDNYESRQKRSDGLSNLREAKEERKDSFTELSELSSGDSSGLYNQHLSYVNKLHMCWYKGQSAVIVDDQIDQERVRKMILFILSLNCNVKRPFLIISTSTGLSAWETEFLHLAPSANLVVYQGDKDVRSSIRSLEFYNEDGGVLFQILLSPSDIVIEDLDALRCIKWEAIIIDECQRRPRILGNIDDVNILGAEIRLLLVSGQIKEDRADYMKLLSLLKSGLDELHFSSASISNLKSQLEQYIALKCNSDSSRFIEYWVPAQLSSLQLEQYCSLLLSNSLSLCSGPKPASVDALGELIISTRKCCNHPYLLDKSLNNVVTRGLPVEEHLDIGIKASGKLQLLEKILFEAKHRELRVIILFQSSGGSGSIGDILDDVLLQRFGNDCYVRYGCGYVPSKAQAALDTFNDRESGKFVFLIESRACHPSIKLSSVDIIISFDSGLDMQNDIKCLQKMSISSKLKKITVLRLYSCFTVEEKVLMLAKEGIALVSNKRKKELDSNMQLINQSTYHTLLKWGASYLFSKLDDLHGSGTSVSASDISNQSNLNDVICELSSKLVCDSGGTDSHRQSFISRVEQNGGEYARNISLLGEREMKKLGNETHTFSWSDLLKGRNPHWKFLSASSQRNRKTVEYFHHTVKGSENENGAITRKKRKESTDSVYPIGKNASKDNIDLEERKITKIVDPKRRKVSKEVIDSKGRNVSTDVVDSKHLKKKWKNKKSRSADKSKSKLNGADAMTKQIPKQKKLADMPKSNKLLSKPDISILCDVLHFPENDKVVTMKILEYVFEHYDIDCLEDSTVQAFEISVCWLAASLLEHKIDRKHSLDLAKRHLNFNCTEGEATDVYNSLQECKENISSCLQNELCVEKTNINGASSSMTPELQHSAEDENQKGFQHPSVSNLVKSVTNEPDLPRKSPTTVLFSQDQIYTENFHNEPYMAHESSTSQTIPGSLPGEADAISMESDADERINAVNSAAAEVSHLEHWNISPNPSNDFNNVNPVTVLERQSPIVGSDIMQSDIRVFEDPQTLNQVIDIDNSMNISTHLAQLHNVETDTVTCDRIAVPEVRQWCSIVNPVCVESTTSEFAECPLPYRQLSHANLMQLPQSLSASPSFMEDLSRTVMPLDRVTNHNCLRESVEILQGLCEPVELVNSSPVILEPSSYAPGNENASHDPHNINNPGYMNSDPFQAHYLTSQMPYVADPNTLLFEMERIQKMNEEAVMTYEKKKLQLQSDYEKEVEMLRAKHYTLLQNVDTAAALKKIELEAHRDIVFRNMILADVWSRTDSIC 1534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03881 1534 SMART PHD_3 60 105 IPR001965 -
Tsu07g03881 1534 Gene3D - 119 177 - -
Tsu07g03881 1534 Pfam Chromo (CHRromatin Organisation MOdifier) domain 120 174 IPR023780 -
Tsu07g03881 1534 ProSiteProfiles Chromo and chromo shadow domain profile. 118 183 IPR000953 -
Tsu07g03881 1534 ProSitePatterns Zinc finger PHD-type signature. 61 104 IPR019786 -
Tsu07g03881 1534 SUPERFAMILY Chromo domain-like 77 177 IPR016197 -
Tsu07g03881 1534 ProSiteProfiles Zinc finger PHD-type profile. 58 107 IPR019787 -
Tsu07g03881 1534 ProSiteProfiles Chromo and chromo shadow domain profile. 196 266 IPR000953 -
Tsu07g03881 1534 SUPERFAMILY Chromo domain-like 213 258 IPR016197 -
Tsu07g03881 1534 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 504 772 IPR027417 -
Tsu07g03881 1534 Gene3D - 200 285 - -
Tsu07g03881 1534 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 329 471 IPR027417 -
Tsu07g03881 1534 MobiDBLite consensus disorder prediction 953 1000 - -
Tsu07g03881 1534 MobiDBLite consensus disorder prediction 1123 1143 - -
Tsu07g03881 1534 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 114 IPR013083 -
Tsu07g03881 1534 MobiDBLite consensus disorder prediction 892 907 - -
Tsu07g03881 1534 MobiDBLite consensus disorder prediction 892 912 - -
Tsu07g03881 1534 Gene3D - 292 504 IPR038718 -
Tsu07g03881 1534 Gene3D - 505 736 IPR027417 -
Tsu07g03881 1534 Gene3D - 1449 1529 - -
Tsu07g03881 1534 PANTHER HELICASE PROTEIN MOM1-LIKE ISOFORM X1 37 1142 - -
Tsu07g03881 1534 PANTHER HELICASE PROTEIN MOM1-LIKE ISOFORM X1 1205 1526 - -
Tsu07g03881 1534 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 37 1142 - -
Tsu07g03881 1534 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 1205 1526 - -
Tsu07g03881 1534 SMART chromo_7 117 176 IPR000953 -
Tsu07g03881 1534 SMART chromo_7 183 259 IPR000953 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03881 Tsu-Chr7 44951325 44966038 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tsu07g03881 SNF2_N 3.7e-06 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03881 - K11643 gmx:100813574 1526.92