Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03878 ATGGAAGTAGTAGCAGCAGCCATActaaaaaacaacattaatgATTATGATTCATTCTGCTTAACTCATGCTAATGCTAATAACATGAAAGTGAATGCTGCTGATCCTTTGAATTGGGGTGTGGCGGCTGAGGCAATGAAGGGGAGTCACTTGGATGAGGTGAAGCGTATGGTGGAGGAATACCGGAAGCCAGTAGTCCGTCTTGGTGGCGAGACACTGACAATTTCTCAGGTGGCTGCCATTGCTGCACACGATGGTGCAACGGTGGAGCTGTCGGAATCTGCTAGAGCCGGCGTTAAGGCCAGCAGTGATTGGGTTATGGAGAGTATGAATAAAGGTACAGACAGTTATGGTGTCACCACAGGATTCGGCGCAACCTCACACCGCCGAACCAAACAAGGTGGTGCTTTGCAGAAAGAACTCATAAGGTTTTTGAATGCTGGAATATTCGGAAATGCAACAGAGTCAAATCACATACTACCACACACAGCAACAAGAGCTGCCATGTTAGTGAGAATTAACACACTTCTACAAGGCTATTCAGGAATTAGATTTGAAATCTTAGAAGCCATCACCAAGCTCCTTAACAACAATGTCACCCCATGTTTACCACTTCGTGGTACAATCACAGCTTCAGGAGATTTAGTTCCTCTTTCTTATATTGCTGGTTTACTAACTGGACGGCCAAACTCCAAGGCTCACGGACCCTCTGGAGAAGTACTTAATGCAAAAGAAGCTTTTCAATCGGCTGGAATCAATGCCGAGTTCTTTGAATTACAACCAAAAGAAGGACTTGCACTTGTTAACGGAACTGCTGTTGGTTCTGGTTTAGCTTCAATTGTTCTGTTTGAAGCTAACATACTAGCTGTGTTATCTGAAGTTCTATCAGCTATTTTTGCTGAAGTGATGCAAGGAAAACCTGAATTTACTGATCATTTGACACACAAGTTGAAGCACCACCCTGGTCAAATTGAAGCTGCTGCTATTATGGAACACATTTTGGATGGGAGTGCTTATGTCAAAGATGCTAAGAAGTTGCATGAGATGGACCCTTTGCAGAAGCCAAAGCAAGATAGATATGCACTTAGAACTTCGCCGCAATGGCTTGGTCCTTTGATTGAAGTGATTAGATTCTCTACAAAGTCAATTGAGAGAGAGATCAACTCTGTCAATGACAACCCTTTGATTGATGTTTCAAGAAACAAGGCTTTGCACGGTGGAAATTTTCAAGGAACACCTATCGGAGTATCCATGGATAATACACGTTTGGCTCTTGCATCAATTGGTAAACTTATGTTTGCTCAATTCTCCGAGCTTGTCAATGATTTTTACAACAATGGGTTGCCTTCAAATCTCTCTGCTAGTAGAAATCCTAGCTTGGATTATGGGTTCAAGGGATCCGAAATTGCCATGGCTTCCTATTGTTCTGAGTTACAATATCTTGCAAATCCAGTTACAACCCATGTCCAAAGTGCCGAACAACACAACCAAGATGTGAACTCTTTGGGTTTGATTTCTTCTAGAAAAACATATGAAGCCATTGAGATCCTTCAGTTGATGTCTTCCACATTCTTGATTGCACTTTGCCAAGCTATTGATTTAAGACATTTAGAGGAGAATTTGAGGCACTCAGTTAAAAATATTGTGAGTCAAGTGGCTAAGAAAACCTTAACTATAGGTGTCAATGGAGAACTTCACCCTTCAAGATTTTGTGAAAAAGACTTGTTGAAAGTGGTTGATAGGGAACATGTATTTGCTTACATTGATGATCCTTGTAGTGCAACATACCCATTGATGCAAAAATTGAGGCAAGTACTAGTGGATCATGCTTTAGTTAATGGAGAAAGTGAGAAGAATTTCAACACATCAATCTTCCAAAAGATTGCAACTTTTGAGGAAGAGTTGAAGTCTCTCTTGCCAAAAGAGGTTGAAAGTGCAAGGACTGCATATGAGAGTGGAAATTCTACAATTCCAAACAAGATCAATGGGTGCAGATCTTATCCACTTTACAATTTCGTGAGAAAGGAGTTGGGAACTAGTTTGTTAACTGGAGAAAATGTCATTTCACCAGGTGAGGAGTGTGATAAATTATTTACAGCTATGTGTCAGGGAAAAATCATTGATCCTCTTCTTGAATGCTTAGGGGAGTGGAACGGGGCTCCGCTTCCAATTTGTTAA 2178 0.4096 MEVVAAAILKNNINDYDSFCLTHANANNMKVNAADPLNWGVAAEAMKGSHLDEVKRMVEEYRKPVVRLGGETLTISQVAAIAAHDGATVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNATESNHILPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAHGPSGEVLNAKEAFQSAGINAEFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSAYVKDAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGSEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTYEAIEILQLMSSTFLIALCQAIDLRHLEENLRHSVKNIVSQVAKKTLTIGVNGELHPSRFCEKDLLKVVDREHVFAYIDDPCSATYPLMQKLRQVLVDHALVNGESEKNFNTSIFQKIATFEEELKSLLPKEVESARTAYESGNSTIPNKINGCRSYPLYNFVRKELGTSLLTGENVISPGEECDKLFTAMCQGKIIDPLLECLGEWNGAPLPIC 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03878 725 Gene3D - 538 659 IPR023144 -
Tsu07g03878 725 Gene3D Fumarase/aspartase (Central domain) 272 720 - -
Tsu07g03878 725 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 35 714 IPR005922 GO:0005737|GO:0006559|GO:0016841
Tsu07g03878 725 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 207 223 IPR022313 GO:0016841
Tsu07g03878 725 PANTHER HISTIDINE AMMONIA-LYASE 27 725 IPR001106 -
Tsu07g03878 725 Pfam Aromatic amino acid lyase 73 546 IPR001106 -
Tsu07g03878 725 SUPERFAMILY L-aspartase-like 35 725 IPR008948 GO:0003824
Tsu07g03878 725 CDD PAL-HAL 71 535 IPR001106 -
Tsu07g03878 725 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 27 725 - -
Tsu07g03878 725 Gene3D - 25 271 IPR024083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03878 Tsu-Chr7 44922236 44925408 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03878 19 725 Monolignol Biosynthesis Gene Families AT2G37040 82.486 0.0 1241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03878 K10775 - gmx:100803857 1261.9