Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03873 ATGAAAGCGAAAAGAAAAGGTGGCAATCTAGGTCTAACTGAGATGAATAAGGAGTCAAAGACAAAATTGAGAGATTTGAACAGGAGTGTGGATCCTCAGCTATGGCATGCCATTGCTGGAGGAATGGTGCAAATGCCGGAAGTTAACTCTAAGATCTTCTATTTTCCTCAAGGTCACGCCGAGCATGCATGTGAATTAGTGAATTTTAGTGCTCACTCTATAATTCCACACAAAATTCCATCTTTAATTCCATGTAGAGTTGAATCTATCAAATATATGGCTGATCCTGAGACAGATGAAGTGTTTGCAAAACTCAGGCTTGTTCCTATGCATATTAGCCAGGTTCGTTTTGACGATGATGATGGTGCTAGTGGCATCGGTGTGTCTGAAACTAAGGATAAACATCAATGTTTTGCGAAAACCTTGACACAATCTGATTCAAACAATGGTGGTGGGTTTTCTTGTCCTAGATACTGTGCTGAAACACTTTTTCCTAATTTAGACTATTCAGGTAACCCTCCTTCTCAGGACATTTATCCCAAAGACGTTCATGGCGAAACGTGGCCTTTCAAACACGTTTATAGGGGCACGCCGAAGCGGCATCTGTTGACAACTGGGTGGAGTCCTTTTGTTAGTGACAAGAAAATTGTTTCCGGGGATTCAATTGTGTTTGTGAAAACTGAAAACGGTGATCTTCATGTCGGACTTCGGAGGGCTAAAAGGAAAAGGGATGTTAGACTTGATCCTTCATCAGAGATGAAACCTAGCAGTGGAATTGGAATTCGGCCTGATTTACCTTACGGAGTATTTACATCGTATTCGGGAGAGGAAGATAATAAACTTAGAAGAAATGGTAAAGGCAATGGATTGAGAATAAGTGATGGGATGATGGGTAGGGGGAAAGTGAAAGCTCAAGAAGTTATTGAAGCGGTAAAACGTAGTACTAATATGGAGCCGTTTGATGTGGTTTACTATCCTCGAGCAGGTACTCCCGAGTTCTTTGTGAAAATTTCTTTAATTGGAAAAGCACTTCAGATTAGGTGGTGTCATGGAATGAGATTCAAGATGGCCATTGAAACTGAGGACTCAACGAGGATAAGTTGGTTTGTCGGAACTGTTGTTTCTGTTCAGGCTTCTGATCCAGCATGGCCCGAATCTTTTTGGAGATTTCTCCAGGTTGAATGGGATGAACCGGAGTTACTTAAAAATGTGAAAAGGGTGAATCCGTGGCAAGTTGAAATAGTATCGAACATGCCTTTGATCCCTCTTTCCCCTTACGTACCACCGAGGAAGAAATTGAGATTGCCTCAACACCCAAATTACCCCCTTGATGGTCAATTTTCAATGCCAACTTTTCCAAACAACTTCCTAAGTCCGAATGTTCCAATTTTTCATTTACCGGAAACTACTCCTGTCGGCATGCAGGGAGCCAGGCATCCTCATTTCGGTTTTTCCTCATCAAGCTTTCACCTCAATAAATTTCCATTAGGTCTCTTTAAGCCTAGTTTCCAACAACCGTTTAATCATACTGCTACAACATCGACGACGGTCCCTTATAACTCAGCATTGCAAAAGCCAAACACAAGTGAGAATGCTTCATGCTCGCTATCGATATCAACTTCTACACAATCGTCAGAGAAATCAGACCGTGTGAAGCCCTCGCATCTCATGCTTTTTGGCCAAAAAATTACAATCGAGAACAAAATTTCTTCGAATACAACTGCTGACGCTGGAAATGAAAATATCGAGAAGAAAATAACTAATAACTTTTCTGATCTTCATCTACAAGGCCTGCCGAAATGTTCCCCTGGTGATCGGTTTGAGACGAATCGTAAGAATTAA 1842 0.4142 MKAKRKGGNLGLTEMNKESKTKLRDLNRSVDPQLWHAIAGGMVQMPEVNSKIFYFPQGHAEHACELVNFSAHSIIPHKIPSLIPCRVESIKYMADPETDEVFAKLRLVPMHISQVRFDDDDGASGIGVSETKDKHQCFAKTLTQSDSNNGGGFSCPRYCAETLFPNLDYSGNPPSQDIYPKDVHGETWPFKHVYRGTPKRHLLTTGWSPFVSDKKIVSGDSIVFVKTENGDLHVGLRRAKRKRDVRLDPSSEMKPSSGIGIRPDLPYGVFTSYSGEEDNKLRRNGKGNGLRISDGMMGRGKVKAQEVIEAVKRSTNMEPFDVVYYPRAGTPEFFVKISLIGKALQIRWCHGMRFKMAIETEDSTRISWFVGTVVSVQASDPAWPESFWRFLQVEWDEPELLKNVKRVNPWQVEIVSNMPLIPLSPYVPPRKKLRLPQHPNYPLDGQFSMPTFPNNFLSPNVPIFHLPETTPVGMQGARHPHFGFSSSSFHLNKFPLGLFKPSFQQPFNHTATTSTTVPYNSALQKPNTSENASCSLSISTSTQSSEKSDRVKPSHLMLFGQKITIENKISSNTTADAGNENIEKKITNNFSDLHLQGLPKCSPGDRFETNRKN 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03873 613 CDD B3_DNA 137 238 IPR003340 GO:0003677
Tsu07g03873 613 MobiDBLite consensus disorder prediction 524 551 - -
Tsu07g03873 613 SMART B3_2 138 240 IPR003340 GO:0003677
Tsu07g03873 613 Gene3D - 347 419 - -
Tsu07g03873 613 Pfam B3 DNA binding domain 138 239 IPR003340 GO:0003677
Tsu07g03873 613 PANTHER AUXIN RESPONSE FACTOR 19 592 - -
Tsu07g03873 613 MobiDBLite consensus disorder prediction 524 547 - -
Tsu07g03873 613 Pfam Auxin response factor 312 392 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tsu07g03873 613 Gene3D - 136 240 IPR015300 -
Tsu07g03873 613 SUPERFAMILY DNA-binding pseudobarrel domain 133 241 IPR015300 -
Tsu07g03873 613 MobiDBLite consensus disorder prediction 1 22 - -
Tsu07g03873 613 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 592 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tsu07g03873 613 ProSiteProfiles B3 DNA-binding domain profile. 138 240 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03873 Tsu-Chr7 44849705 44851814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03873 28 584 B3 DNA Binding Superfamily AT4G30080 49.913 4.57e-174 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tsu07g03873 B3 2.9e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03873 - - mtr:MTR_7g101280 911.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03873 07 44849705 44851814 Tsu01g04136 01 49262079 49265020 ECH
Tsu07g03873 07 44849705 44851814 Tsu01g02435 01 26292214 26295142 ECH
Tsu07g03873 07 44849705 44851814 Tsu07g03873 07 44849705 44851814 ECH
Tsu07g03873 07 44849705 44851814 Tsu02g03598 02 40368102 40372041 ECH