Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03870 ATGGCAAAAGACTTTGAAACAGAACCTCAAGGTGGTGGTTTACCAAACAAGGACTACCAAGACCCACCACCAGCTCCACTCTTTGACACTACCGAATTCAGCCAATGGTCCTTCTATAGAGCCCTCATAGCCGAATTCGTCGCCACTCTCCTCTTCCTCTATGTCACCGTTTTAACCGTCATTGGCTATAATGCCCAAACTGATCCAGCTCATAACGGCACCCATTGTGACGGTGTCGGTATCCTCGGCATCGCTTGGGCCTTCGGTGGCATGATTTTTGTCCTCGTCTATTGCACTGCCGGTATATCTGGGGGGCACATAAATCCGGCGGTGACATTTGGGCTATTTCTTGCAAGAAAGGTATCATTGATTAGAGCTGTATTATACATGGTGGCACAGTGTTTAGGAGCAATATGTGGTGTTGGATTAGTAAAAGGTTTTCAGAAAAGTTACTATAACAGATACAAAGGTGGTGCCAACATGTTAAGTGATGGTTACAGTAAAGGAACTGGGTTAGGTGCTGAGATTATTGGAACTTTTGTTCTTGTTTACACCGTTTTCTCAGCCACCGATCCAAAAAGAAATGCTAGAGATTCTCATGTTCCTGTTTTGGCACCACTTCCAATTGGGTTTGCTGTGTTTATGGTTCACCTTGCTACCATTCCTATCACTGGAACTGGTATCAATCCTGCTAGAAGTTTTGGAGCTGCTGTGATTTACAACAATGAGAAAGCATGGGATGACCAATGGATCTTCTGGGTTGGACCCTTTATTGGTGCTGCCATTGCTGCAATTTACCACCAGTTTGTGTTGAGAGCACAAGCAGCTAAGGCTTTGGGTTCTTTCAGGAGTTCTTCAAATCTGTGA 867 0.4475 MAKDFETEPQGGGLPNKDYQDPPPAPLFDTTEFSQWSFYRALIAEFVATLLFLYVTVLTVIGYNAQTDPAHNGTHCDGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAICGVGLVKGFQKSYYNRYKGGANMLSDGYSKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPFIGAAIAAIYHQFVLRAQAAKALGSFRSSSNL 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03870 288 Gene3D Glycerol uptake facilitator protein. 25 288 IPR023271 -
Tsu07g03870 288 CDD MIP 40 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu07g03870 288 PRINTS Major intrinsic protein family signature 250 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu07g03870 288 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu07g03870 288 PRINTS Major intrinsic protein family signature 174 192 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu07g03870 288 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu07g03870 288 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu07g03870 288 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu07g03870 288 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 285 IPR034294 -
Tsu07g03870 288 PANTHER AQUAPORIN PIP2-4-RELATED 1 285 - -
Tsu07g03870 288 Pfam Major intrinsic protein 32 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu07g03870 288 MobiDBLite consensus disorder prediction 1 22 - -
Tsu07g03870 288 TIGRFAM MIP: MIP family channel proteins 44 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu07g03870 288 ProSitePatterns MIP family signature. 106 114 IPR022357 -
Tsu07g03870 288 SUPERFAMILY Aquaporin-like 32 272 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03870 Tsu-Chr7 44824186 44825997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03870 1 288 Major Intrinsic Protein MIP AT2G37170 81.250 2.05e-173 480
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03870 K09872 - rcu:8284532 494.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03870 07 44824186 44825997 Tsu01g04139 01 49323806 49325188 ECH
Tsu07g03870 07 44824186 44825997 Tsu07g03870 07 44824186 44825997 ECH
Tsu07g03870 07 44824186 44825997 Tsu02g03583 02 40233299 40235466 ECH