Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03868 atGGGAAACATTTCAAGCAACGGCGGTAGTCACCGTCGTCGACACGGCAGTTCAAGGAGAAGCGGTCAccatccaccaccaccacctgtAACACCACAACCCGAAATCACAACACATCAACCATTTGTTTACCCTGGTGCTTCACCGTACCCGAATCCACCTATGCATTATCCTCAGTATCATTATCCTGGTTATTATCCACCGAtgcatcatcatcctcatccaCATATTGACCCTTCCAGATATTACCCTAATCCTTGTGGACCGGTGATGAATCAACCTGCACCGTTTGTTGAGCATCAGAAAGCTGTTACTATAAGGAATGATGTTAATATTAAGAAGGAGACTCTTTCTGTTTCACCTGATGAACAAAACCCtggtttttttcttgtttcatttACCTTTGATGCCACCGTTTCTGGAAGCATCACTGTATATTTCTTTGcaaaagaagatgaaggttGCATCCTCACACCGACCAAGGAAAACCATCTTGCACCTGTGACTGTACAATTCCAGCAAGGTCTTGGACAGAAGTTCAGACAGCAAGCTGGAACTGGTATTAACTTTTCAATGTTTGGGGAGTCAGATTTATTAAAGGTGGGTGACATGGATGTCTACCCTCTAGCAGTGAAGGCAGATGCATCATCAGATAAACATGATGGATCAAATGAAACTGTGACATCTGGCAAGACAAACTCTCAGATAACTCAAGCGGTGTTTGAGAAGGATAAAGGAGAATTTCGGGTAAAAGTTGTTAAGCAGATTTTGTCTGTAAATGGGATGAGGTATGAGCTGCAGGAGATATATGGTATTGGAAATTCAGTGGAGAGTGGTGAGGATGACAATGACCAAGGAAAGGAATGTGTGATCTGCTTGTCGGAGCCTCGTGACACAATCGTTCATCCCTGCCGACATATGtGCATGTGTAGCGGATGTGCAAAGGTTTTGAGGTTCCAGACGAATAGATGCCCGATTTGCAGACAACCAGTTGAGAGGCTTTTGGAGATAAAGGTAGGGACTGAAGAATAA 1032 0.406 MGNISSNGGSHRRRHGSSRRSGHHPPPPPVTPQPEITTHQPFVYPGASPYPNPPMHYPQYHYPGYYPPMHHHPHPHIDPSRYYPNPCGPVMNQPAPFVEHQKAVTIRNDVNIKKETLSVSPDEQNPGFFLVSFTFDATVSGSITVYFFAKEDEGCILTPTKENHLAPVTVQFQQGLGQKFRQQAGTGINFSMFGESDLLKVGDMDVYPLAVKADASSDKHDGSNETVTSGKTNSQITQAVFEKDKGEFRVKVVKQILSVNGMRYELQEIYGIGNSVESGEDDNDQGKECVICLSEPRDTIVHPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGTEE 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03868 343 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 342 - -
Tsu07g03868 343 MobiDBLite consensus disorder prediction 1 47 - -
Tsu07g03868 343 PANTHER MAHOGUNIN 1 342 IPR045194 GO:0061630
Tsu07g03868 343 Pfam Zinc finger, C3HC4 type (RING finger) 287 333 - -
Tsu07g03868 343 SMART ring_2 289 327 IPR001841 -
Tsu07g03868 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 338 IPR013083 -
Tsu07g03868 343 ProSiteProfiles Zinc finger RING-type profile. 289 328 IPR001841 -
Tsu07g03868 343 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 288 328 IPR045195 -
Tsu07g03868 343 SUPERFAMILY RING/U-box 282 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03868 Tsu-Chr7 44805771 44811372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03868 87 308 C3H Transcription Factor Family AT3G09770 63.436 7.30e-95 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03868 - - aprc:113862864 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03868 07 44805771 44811372 Tsu07g03868 07 44805771 44811372 ECH