Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03863 ATGAATATACTTGGTGACCCCTTTTCATTATCCTCTTCCACTAGTGGTTTTGACAAAATCCAAAATACAAACCCTAATCCACCACAAACcaacaagaagaaaagaaatctACCAGGAACACCAGATCCAGATGCTGAAGTGATTGCTCTTTCGCCAAAGACTCTAATGGCGACTAACCGATTCGTCTGCGAAATATGCAACAAAGGCTTCCAAAGGGATCAAAATCTTCAACTTCATAGAAGAGGTCACAACTTACCATGGAAGCTAAAGCAAAGATCCAACAAAGAACCTAGAAAAAAGGTATACATCTGTCCGGAGAAAACCTGCGTCCACCACGACGCAGCCAGGGCGCTCGGAGACCTTACCGGAATAAAGAAACATTTTAGCAGAAAACATGGTGAAAAGAAATGGAAGTGTGATAAATGTTCCAAGAAATATGCAGTTCAGTCTGATTGGAAAGCTCACACCAAAACTTGTGGTACTAGAGAATATAAGTGTGACTGTGGTACCCTCTTCTCTAGGAAGGATAGCTTTATAACACACAGAGCTTTTTGTGATGCATTAGCAGAAGAAAGTGCAAGACACACCTCACTCACTCCTCCAACAACTCTAAATTTCAAGAATGAAGAATCAAATATGATGAACAATCAAACTAGTTTATCACATAATGGATTAATATCATGTCAAGGACTTCAAAATCTTCCACAATATAGTACTCCACATAATGCACTGTTTCATCATGAACAAAGACCAAACTTATCATTATGGCTAAACCAAGAAAATCAACAaatgaatcatcatcatcaaattcaaCATAATTCACTTGAGGATCATGTTTCATCATCAAGTTTTTGTGATGTTATGCAAATTCCACAAACTAGTACTACTGCTCCAATGTCAGCTACTGCACTTCTTCAAAAAGCAGCTCAAATGGGTTCAACAAGAAGTAACACTAGTAATCCTTCCATTTTTAGTGGAAGTTTTGGTTTAATAACTTCATCTAATTCTACACAATCTACTACTCTAAACCAAAACCAAGATGAGGTTAATATGGTAATTAATCAAAACATGAAGCAGCATGAGaattataatattaatcttCCAAGTAGTAGTAATAATGCAGCTATGGTTGGTATTGGATTTAGAGATTTTCTTGGTGTGAGTAATGATGATCAACATCATTCATTTCTACCTCAAGAGCTTGCAAAGTTTGCTTCAATAACTTCAACTATGATGAATAATTACAATGAATTCAATGCATGA 1263 0.3523 MNILGDPFSLSSSTSGFDKIQNTNPNPPQTNKKKRNLPGTPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEPRKKVYICPEKTCVHHDAARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARHTSLTPPTTLNFKNEESNMMNNQTSLSHNGLISCQGLQNLPQYSTPHNALFHHEQRPNLSLWLNQENQQMNHHHQIQHNSLEDHVSSSSFCDVMQIPQTSTTAPMSATALLQKAAQMGSTRSNTSNPSIFSGSFGLITSSNSTQSTTLNQNQDEVNMVINQNMKQHENYNINLPSSSNNAAMVGIGFRDFLGVSNDDQHHSFLPQELAKFASITSTMMNNYNEFNA 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03863 420 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Tsu07g03863 420 Gene3D Classic Zinc Finger 57 84 - -
Tsu07g03863 420 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Tsu07g03863 420 MobiDBLite consensus disorder prediction 1 36 - -
Tsu07g03863 420 SMART c2h2final6 61 83 IPR013087 -
Tsu07g03863 420 SMART c2h2final6 137 157 IPR013087 -
Tsu07g03863 420 SMART c2h2final6 102 132 IPR013087 -
Tsu07g03863 420 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 6 408 - -
Tsu07g03863 420 Gene3D Classic Zinc Finger 96 185 - -
Tsu07g03863 420 PANTHER ZINC FINGER PROTEIN JACKDAW 6 408 IPR033243 GO:0003700
Tsu07g03863 420 MobiDBLite consensus disorder prediction 1 44 - -
Tsu07g03863 420 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03863 Tsu-Chr7 44764048 44766464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03863 3 407 IDZ Gene Family AT5G03150 49.802 3.68e-135 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu07g03863 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03863 K25870 - gmx:100789331 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03863 07 44764048 44766464 Tsu07g03863 07 44764048 44766464 ECH