Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03859 ATGGGGCATAGACACCTATATAATGCATCATCTCCAATGTTTGAGGGTGAGGCTGACCAGAATTGGAATCAAATGCATACTGATCAACATCATGTGAACCATGGAGGGACCAGCTCTTCAGAGAATGGTTCTTTTAATTATCCTGTGGAAAATATATCTATAGATAACATTTATTTCCCCTCTCATTGGAACACCAACACAAGGTCAAGTGGATATGCATCATCTGGCCTCAACATTGAAGtacctcctcctcctcctcatcaATTGGATACACAAGGCACTTCTAACAATCATTTTATGCATTCATCTAGTGCTGGACCTTTCTTTACAGTGTCTGAAAATTATGTACACCAGCCTTCTTCTTCCAATTATGACCGACAAGCATTTCACGTTGATAATGGTTTTGTTGATCTTACAATGGGAAGTGGACGAGGACATCACAAGAGAAAGAGCCCTGGAATTCCCTCAGTCTATGAGAGAGGCAGTTCAAGTGGATATTTCAATGCTGGGAGTTCAACTGATCTTCCTATGCCTTCAGAATCACGGCCAGAGAAGCCAAATATGGATTCCCAATATATGCCTTGGGATCATGTTGCTATGACACCCACTTTCAGAGGTGCTGGCCTCTCAATGAAGGGTGAGAGTTCTGTAAGGAATGTGAGGAGCCGTTCTGCATTTGATTTGGAATCCAACCTGTCTAGGACCCATTTGTCAAGTAACCTTTCACACAACTCGTACCCTAATGTCCCACCAGTCGGCCATTCTAGCTTGGCGGATCTTTCAGCTCAGGTTTCTACCTCTTTGACAAGGGATTGGAGCCAAATGAACGTAACTCCTGCTACTAGTACTTTTGGTCTTGAGACAAGTCACTTCCCTGTTGGAAATGCCGCTGCTGCCGCCGCCGCTAGTAATGCTACTTTAGATGTCGGGAGCTTCCATCATGAATATGGTACAAGCAGAAATCCTACTACTGctcaaagttttcaaaatttgactCAGACTGCTAGGGGAACGCGAAGTAATTACTCTCAAAGATCTGCTCCAGCTTATAGGGCTTCTTCAAGCTTGCGCCTGGGACATGCACCTTCAGATAATAATGGATTGCCCATGGTAGCTGAAAGTCACCCTTCTAGACATCCTAGGCCGTTGACCACTATTGGCTGGCGGAACAGTGATAGAAATGGAAGGTCAAGAATTTCCAGCGAAAGATATAGAGCATTGGCTGATGAGGCTAGTCTCCATGCTAGATTTGCTTCTGAGGGTTTCATGATTGTTGAGCGCGCTTCACTATATGGTTCTAGGAATATGCTTGATCAGCACAGAGACATGAGGTTGGACATAGATAGCATGAGCTATGAGGAACTACTTGCACTTGGGGAGAGGATTGGCCAGGTGAACACAGGATTGTCTGAGGATGTGGTTTCCAAGTGTTTGACGGAAACAATATATTGTTCATCTGACCAATGTCAGGATGAAGGAAGCTGTGTGATCTGTCTGgAAGAGTACAAGAACATGGATGATGTTGGGACACTTAAAACTTGTGGACATGACTACCATGTGAGCTGCATTAAAAAGTGGTTATCTATGAAGAAACTATGTCCTATCTGCAAAGCTTCTGCATTGCCTGAGGATAAGAAGgataaataa 1647 0.4262 MGHRHLYNASSPMFEGEADQNWNQMHTDQHHVNHGGTSSSENGSFNYPVENISIDNIYFPSHWNTNTRSSGYASSGLNIEVPPPPPHQLDTQGTSNNHFMHSSSAGPFFTVSENYVHQPSSSNYDRQAFHVDNGFVDLTMGSGRGHHKRKSPGIPSVYERGSSSGYFNAGSSTDLPMPSESRPEKPNMDSQYMPWDHVAMTPTFRGAGLSMKGESSVRNVRSRSAFDLESNLSRTHLSSNLSHNSYPNVPPVGHSSLADLSAQVSTSLTRDWSQMNVTPATSTFGLETSHFPVGNAAAAAAASNATLDVGSFHHEYGTSRNPTTAQSFQNLTQTARGTRSNYSQRSAPAYRASSSLRLGHAPSDNNGLPMVAESHPSRHPRPLTTIGWRNSDRNGRSRISSERYRALADEASLHARFASEGFMIVERASLYGSRNMLDQHRDMRLDIDSMSYEELLALGERIGQVNTGLSEDVVSKCLTETIYCSSDQCQDEGSCVICLEEYKNMDDVGTLKTCGHDYHVSCIKKWLSMKKLCPICKASALPEDKKDK 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03859 548 Pfam Ring finger domain 494 537 IPR001841 -
Tsu07g03859 548 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 460 541 IPR013083 -
Tsu07g03859 548 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 544 IPR045191 GO:0061630
Tsu07g03859 548 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 544 - -
Tsu07g03859 548 SUPERFAMILY RING/U-box 486 541 - -
Tsu07g03859 548 MobiDBLite consensus disorder prediction 334 395 - -
Tsu07g03859 548 ProSiteProfiles Zinc finger RING-type profile. 495 537 IPR001841 -
Tsu07g03859 548 MobiDBLite consensus disorder prediction 334 351 - -
Tsu07g03859 548 CDD RING-H2_TTC3 494 537 - -
Tsu07g03859 548 MobiDBLite consensus disorder prediction 140 186 - -
Tsu07g03859 548 MobiDBLite consensus disorder prediction 157 178 - -
Tsu07g03859 548 SMART ring_2 495 536 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03859 Tsu-Chr7 44727352 44729761 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03859 1 547 C3H Transcription Factor Family AT2G37150 41.113 6.67e-109 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03859 - - gmx:100803627 874.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03859 07 44727352 44729761 Tsu07g03859 07 44727352 44729761 ECH